CMU SCS Mining Billion-node Graphs: Patterns, Generators and Tools Christos Faloutsos CMU.

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Presentation transcript:

CMU SCS Mining Billion-node Graphs: Patterns, Generators and Tools Christos Faloutsos CMU

CMU SCS Thanks! Chris Olston Hadoop Summit '10C. Faloutsos (CMU) 2

CMU SCS C. Faloutsos (CMU) 3 Our goal: Open source system for mining huge graphs: PEGASUS project (PEta GrAph mining System) code and papers Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 4 Outline Introduction – Motivation Problem#1: Patterns in graphs Problem#2: Tools Problem#3: Scalability Conclusions Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 5 Graphs - why should we care? Internet Map [lumeta.com] Food Web [Martinez ’91] Protein Interactions [genomebiology.com] Friendship Network [Moody ’01] Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 6 Graphs - why should we care? IR: bi-partite graphs (doc-terms) web: hyper-text graph... and more: D1D1 DNDN T1T1 TMTM... Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 7 Graphs - why should we care? network of companies & board-of-directors members ‘viral’ marketing web-log (‘blog’) news propagation computer network security: /IP traffic and anomaly detection.... Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 8 Outline Introduction – Motivation Problem#1: Patterns in graphs –Static graphs –Weighted graphs –Time evolving graphs Problem#2: Tools Problem#3: Scalability Conclusions Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 9 Problem #1 - network and graph mining How does the Internet look like? How does FaceBook look like? What is ‘normal’/‘abnormal’? which patterns/laws hold? Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 10 Problem #1 - network and graph mining How does the Internet look like? How does FaceBook look like? What is ‘normal’/‘abnormal’? which patterns/laws hold? –To spot anomalies (rarities), we have to discover patterns Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 11 Problem #1 - network and graph mining How does the Internet look like? How does FaceBook look like? What is ‘normal’/‘abnormal’? which patterns/laws hold? –To spot anomalies (rarities), we have to discover patterns –Large datasets reveal patterns/anomalies that may be invisible otherwise… Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 12 Graph mining Are real graphs random? Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 13 Laws and patterns Are real graphs random? A: NO!! –Diameter –in- and out- degree distributions –other (surprising) patterns So, let’s look at the data Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 14 Solution# S.1 Power law in the degree distribution [SIGCOMM99] log(rank) log(degree) internet domains att.com ibm.com Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 15 Solution# S.2: Eigen Exponent E A2: power law in the eigenvalues of the adjacency matrix E = Exponent = slope Eigenvalue Rank of decreasing eigenvalue May 2001 Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 16 Solution# S.2: Eigen Exponent E [Mihail, Papadimitriou ’02]: slope is ½ of rank exponent E = Exponent = slope Eigenvalue Rank of decreasing eigenvalue May 2001 Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 17 But: How about graphs from other domains? Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 18 More power laws: web hit counts [w/ A. Montgomery] Web Site Traffic in-degree (log scale) Count (log scale) Zipf users sites ``ebay’’ Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 19 epinions.com who-trusts-whom [Richardson + Domingos, KDD 2001] (out) degree count trusts-2000-people user Hadoop Summit '10

CMU SCS And numerous more # of sexual contacts Income [Pareto] –’80-20 distribution’ Duration of downloads [Bestavros+] Duration of UNIX jobs (‘mice and elephants’) Size of files of a user … ‘Black swans’ Hadoop Summit '10C. Faloutsos (CMU) 20

CMU SCS C. Faloutsos (CMU) 21 Outline Introduction – Motivation Problem#1: Patterns in graphs –Static graphs degree, diameter, eigen, triangles cliques –Weighted graphs –Time evolving graphs Problem#2: Tools Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 22 Solution# S.3: Triangle ‘Laws’ Real social networks have a lot of triangles Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 23 Solution# S.3: Triangle ‘Laws’ Real social networks have a lot of triangles –Friends of friends are friends Any patterns? Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 24 Triangle Law: #S.3 [Tsourakakis ICDM 2008] ASNHEP-TH Epinions X-axis: # of Triangles a node participates in Y-axis: count of such nodes Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 25 Triangle Law: #S.3 [Tsourakakis ICDM 2008] ASNHEP-TH Epinions X-axis: # of Triangles a node participates in Y-axis: count of such nodes Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 26 Triangle Law: #S.4 [Tsourakakis ICDM 2008] SNReuters Epinions X-axis: degree Y-axis: mean # triangles n friends -> ~n 1.6 triangles Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 27 Triangle Law: Computations [Tsourakakis ICDM 2008] But: triangles are expensive to compute (3-way join; several approx. algos) Q: Can we do that quickly? details Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 28 Triangle Law: Computations [Tsourakakis ICDM 2008] But: triangles are expensive to compute (3-way join; several approx. algos) Q: Can we do that quickly? A: Yes! #triangles = 1/6 Sum ( i 3 ) (and, because of skewness, we only need the top few eigenvalues! details Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 29 Triangle Law: Computations [Tsourakakis ICDM 2008] 1000x+ speed-up, >90% accuracy details Hadoop Summit '10

CMU SCS EigenSpokes B. Aditya Prakash, Mukund Seshadri, Ashwin Sridharan, Sridhar Machiraju and Christos Faloutsos: EigenSpokes: Surprising Patterns and Scalable Community Chipping in Large Graphs, PAKDD 2010, Hyderabad, India, June C. Faloutsos (CMU) 30 Hadoop Summit '10

CMU SCS EigenSpokes Eigenvectors of adjacency matrix  equivalent to singular vectors (symmetric, undirected graph) 31 C. Faloutsos (CMU)Hadoop Summit '10

CMU SCS EigenSpokes Eigenvectors of adjacency matrix  equivalent to singular vectors (symmetric, undirected graph) 32 C. Faloutsos (CMU)Hadoop Summit '10 N N details

CMU SCS EigenSpokes EE plot: Scatter plot of scores of u1 vs u2 One would expect –Many origin –A few scattered ~randomly C. Faloutsos (CMU) 33 u1 u2 Hadoop Summit '10 1 st Principal component 2 nd Principal component

CMU SCS EigenSpokes EE plot: Scatter plot of scores of u1 vs u2 One would expect –Many origin –A few scattered ~randomly C. Faloutsos (CMU) 34 u1 u2 90 o Hadoop Summit '10

CMU SCS EigenSpokes - pervasiveness Present in mobile social graph  across time and space Patent citation graph 35 C. Faloutsos (CMU)Hadoop Summit '10

CMU SCS EigenSpokes - explanation Near-cliques, or near- bipartite-cores, loosely connected 36 C. Faloutsos (CMU)Hadoop Summit '10

CMU SCS EigenSpokes - explanation Near-cliques, or near- bipartite-cores, loosely connected 37 C. Faloutsos (CMU)Hadoop Summit '10

CMU SCS EigenSpokes - explanation Near-cliques, or near- bipartite-cores, loosely connected 38 C. Faloutsos (CMU)Hadoop Summit '10

CMU SCS EigenSpokes - explanation Near-cliques, or near- bipartite-cores, loosely connected So what?  Extract nodes with high scores  high connectivity  Good “communities” spy plot of top 20 nodes 39 C. Faloutsos (CMU)Hadoop Summit '10

CMU SCS Bipartite Communities! magnified bipartite community patents from same inventor(s) cut-and-paste bibliography! 40 C. Faloutsos (CMU)Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 41 Outline Introduction – Motivation Problem#1: Patterns in graphs –Static graphs degree, diameter, eigen, triangles cliques –Weighted graphs –Time evolving graphs Problem#2: Tools Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 42 Observations on weighted graphs? A: yes - even more ‘laws’! M. McGlohon, L. Akoglu, and C. Faloutsos Weighted Graphs and Disconnected Components: Patterns and a Generator. SIG-KDD 2008 Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 43 Observation W.1: Fortification Q: How do the weights of nodes relate to degree? Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 44 Observation W.1: Fortification More donors, more $ ? $10 $5 Hadoop Summit '10 ‘Reagan’ ‘Clinton’ $7

CMU SCS Edges (# donors) In-weights ($) C. Faloutsos (CMU) 45 Observation W.1: fortification: Snapshot Power Law Weight: super-linear on in-degree exponent ‘iw’: 1.01 < iw < 1.26 Orgs-Candidates e.g. John Kerry, $10M received, from 1K donors More donors, even more $ $10 $5 Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 46 Outline Introduction – Motivation Problem#1: Patterns in graphs –Static graphs –Weighted graphs –Time evolving graphs Problem#2: Tools … Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 47 Problem: Time evolution with Jure Leskovec (CMU -> Stanford) and Jon Kleinberg (Cornell – CMU) Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 48 T.1 Evolution of the Diameter Prior work on Power Law graphs hints at slowly growing diameter: –diameter ~ O(log N) –diameter ~ O(log log N) What is happening in real data? Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 49 T.1 Evolution of the Diameter Prior work on Power Law graphs hints at slowly growing diameter: –diameter ~ O(log N) –diameter ~ O(log log N) What is happening in real data? Diameter shrinks over time Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 50 T.1 Diameter – “Patents” Patent citation network 25 years of –2.9 M nodes –16.5 M edges time [years] diameter Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 51 T.2 Temporal Evolution of the Graphs N(t) … nodes at time t E(t) … edges at time t Suppose that N(t+1) = 2 * N(t) Q: what is your guess for E(t+1) =? 2 * E(t) Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 52 T.2 Temporal Evolution of the Graphs N(t) … nodes at time t E(t) … edges at time t Suppose that N(t+1) = 2 * N(t) Q: what is your guess for E(t+1) =? 2 * E(t) A: over-doubled! –But obeying the ``Densification Power Law’’ Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 53 T.2 Densification – Patent Citations Citations among patents –2.9 M nodes –16.5 M edges Each year is a datapoint N(t) E(t) 1.66 Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 54 Outline Introduction – Motivation Problem#1: Patterns in graphs Problem#2: Tools –CenterPiece Subgraphs –OddBall (anomaly detection) Problem#3: Scalability -PEGASUS Conclusions Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 55 CentralizedHadoop/PEG ASUS Degree Distr. old Pagerank old Diameter/ANF old DONE Conn. Comp old DONE TrianglesDONE VisualizationSTARTED Outline – Algorithms & results Hadoop Summit '10

CMU SCS HADI for diameter estimation Radius Plots for Mining Tera-byte Scale Graphs U Kang, Charalampos Tsourakakis, Ana Paula Appel, Christos Faloutsos, Jure Leskovec, SDM’10 Naively: diameter needs O(N**2) space and up to O(N**3) time – prohibitive (N~1B) Our HADI: linear on E (~10B) –Near-linear scalability wrt # machines –Several optimizations -> 5x faster C. Faloutsos (CMU) 56 Hadoop Summit '10

CMU SCS YahooWeb graph (120Gb, 1.4B nodes, 6.6 B edges) Largest publicly available graph ever studied. ???? ?? 19+? [Barabasi+] (‘99, O(10 6 ) nodes) 57 C. Faloutsos (CMU) Radius Count Hadoop Summit '10

CMU SCS YahooWeb graph (120Gb, 1.4B nodes, 6.6 B edges) Largest publicly available graph ever studied. ???? 58 C. Faloutsos (CMU) Radius Count Hadoop Summit '10 14 (dir.) ~7 (undir.) 19+? [Barabasi+] (‘99, O(10 6 ) nodes)

CMU SCS YahooWeb graph (120Gb, 1.4B nodes, 6.6 B edges) effective diameter: surprisingly small. 59 C. Faloutsos (CMU)Hadoop Summit '10 Shape?

CMU SCS YahooWeb graph (120Gb, 1.4B nodes, 6.6 B edges) effective diameter: surprisingly small. Multi-modality: probably mixture of cores. 60 C. Faloutsos (CMU)Hadoop Summit '10

CMU SCS 61 C. Faloutsos (CMU) YahooWeb graph (120Gb, 1.4B nodes, 6.6 B edges) effective diameter: surprisingly small. Multi-modality: probably mixture of cores. Hadoop Summit '10

CMU SCS Radius Plot of GCC of YahooWeb. 62 C. Faloutsos (CMU)Hadoop Summit '10

CMU SCS Running time - Kronecker and Erdos-Renyi Graphs with billions edges. details

CMU SCS C. Faloutsos (CMU) 64 CentralizedHadoop/PEG ASUS Degree Distr. old Pagerank old Diameter/ANF old DONE Conn. Comp old DONE TrianglesDONE VisualizationSTARTED Outline – Algorithms & results Hadoop Summit '10

CMU SCS Generalized Iterated Matrix Vector Multiplication (GIMV) C. Faloutsos (CMU) 65 PEGASUS: A Peta-Scale Graph Mining System - Implementation and ObservationsSystem - Implementation and Observations. U Kang, Charalampos E. Tsourakakis, and Christos Faloutsos. (ICDM) 2009, Miami, Florida, USA. Best Application Paper (runner-up).ICDM Hadoop Summit '10

CMU SCS Generalized Iterated Matrix Vector Multiplication (GIMV) C. Faloutsos (CMU) 66 PageRank proximity (RWR) Diameter Connected components (eigenvectors, Belief Prop. … ) Matrix – vector Multiplication (iterated) Hadoop Summit '10 details

CMU SCS 67 Example: GIM-V At Work Connected Components Size Count C. Faloutsos (CMU) Hadoop Summit '10

CMU SCS 68 Example: GIM-V At Work Connected Components Size Count C. Faloutsos (CMU) Hadoop Summit '10 ~0.7B singleton nodes

CMU SCS 69 Example: GIM-V At Work Connected Components Size Count C. Faloutsos (CMU) Hadoop Summit '10

CMU SCS 70 Example: GIM-V At Work Connected Components Size Count 300-size cmpt X 500. Why? 1100-size cmpt X 65. Why? C. Faloutsos (CMU) Hadoop Summit '10

CMU SCS 71 Example: GIM-V At Work Connected Components Size Count suspicious financial-advice sites (not existing now) C. Faloutsos (CMU) Hadoop Summit '10

CMU SCS 72 GIM-V At Work Connected Components over Time LinkedIn: 7.5M nodes and 58M edges Stable tail slope after the gelling point C. Faloutsos (CMU)Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 73 OVERALL CONCLUSIONS – low level: Several new patterns (fortification, triangle-laws, conn. components, etc) New tools: –CenterPiece Subgraphs, G-Ray, anomaly detection (OddBall), EigenSpokes Scalability: PEGASUS / hadoop Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 74 OVERALL CONCLUSIONS – high level Large datasets may reveal patterns/outliers that would be invisible otherwise Terrific opportunities –Large datasets, easily(*) available PLUS –s/w and h/w developments Promising collaborations between DB/Sys, AI/Stat, sociology, marketing, epidemiology, ++ Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 75 References Leman Akoglu, Christos Faloutsos: RTG: A Recursive Realistic Graph Generator Using Random Typing. ECML/PKDD (1) 2009: Deepayan Chakrabarti, Christos Faloutsos: Graph mining: Laws, generators, and algorithms. ACM Comput. Surv. 38(1): (2006) Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 76 References Deepayan Chakrabarti, Yang Wang, Chenxi Wang, Jure Leskovec, Christos Faloutsos: Epidemic thresholds in real networks. ACM Trans. Inf. Syst. Secur. 10(4): (2008) Deepayan Chakrabarti, Jure Leskovec, Christos Faloutsos, Samuel Madden, Carlos Guestrin, Michalis Faloutsos: Information Survival Threshold in Sensor and P2P Networks. INFOCOM 2007: Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 77 References Christos Faloutsos, Tamara G. Kolda, Jimeng Sun: Mining large graphs and streams using matrix and tensor tools. Tutorial, SIGMOD Conference 2007: 1174 Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 78 References T. G. Kolda and J. Sun. Scalable Tensor Decompositions for Multi-aspect Data Mining. In: ICDM 2008, pp , December Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 79 References Jure Leskovec, Jon Kleinberg and Christos Faloutsos Graphs over Time: Densification Laws, Shrinking Diameters and Possible Explanations, KDD 2005 (Best Research paper award). Jure Leskovec, Deepayan Chakrabarti, Jon M. Kleinberg, Christos Faloutsos: Realistic, Mathematically Tractable Graph Generation and Evolution, Using Kronecker Multiplication. PKDD 2005: Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 80 References Jimeng Sun, Yinglian Xie, Hui Zhang, Christos Faloutsos. Less is More: Compact Matrix Decomposition for Large Sparse Graphs, SDM, Minneapolis, Minnesota, Apr Jimeng Sun, Spiros Papadimitriou, Philip S. Yu, and Christos Faloutsos, GraphScope: Parameter- free Mining of Large Time-evolving Graphs ACM SIGKDD Conference, San Jose, CA, August 2007 Hadoop Summit '10

CMU SCS References Jimeng Sun, Dacheng Tao, Christos Faloutsos: Beyond streams and graphs: dynamic tensor analysis. KDD 2006: Hadoop Summit '10C. Faloutsos (CMU) 81

CMU SCS C. Faloutsos (CMU) 82 References Hanghang Tong, Christos Faloutsos, and Jia-Yu Pan, Fast Random Walk with Restart and Its Applications, ICDM 2006, Hong Kong. Hanghang Tong, Christos Faloutsos, Center-Piece Subgraphs: Problem Definition and Fast Solutions, KDD 2006, Philadelphia, PA Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 83 References Hanghang Tong, Christos Faloutsos, Brian Gallagher, Tina Eliassi-Rad: Fast best-effort pattern matching in large attributed graphs. KDD 2007: Hadoop Summit '10

CMU SCS C. Faloutsos (CMU) 84 Project info Akoglu, Leman Chau, Polo Kang, U McGlohon, Mary Tsourakakis, Babis Tong, Hanghang Prakash, Aditya Hadoop Summit '10 Thanks to: Yahoo (M45 + gifts + data) NSF, LLNL, CTA-INARC, IBM, SPRINT, INTEL, HP