These images illustrate results of in situ hybridization with eight tomato BACs. Putative locations for the BACs are included in the captions. All of these.

Slides:



Advertisements
Similar presentations
The Role of Fluorescence in situ hybridization (FISH) in Sequencing the Tomato Genome.
Advertisements

1.Generate mutants by mutagenesis of seeds Use a genetic background with lots of known polymorphisms compared to other genotypes. Availability of polymorphic.
Copyright © The McGraw-Hill Companies, Inc. Permission required for reproduction or display. CHAPTER 18 LECTURE SLIDES.
BME 130 – Genomes Lecture 14 Eukaryotic Genome Anatomy.
Genetic and physical maps around the sex-determining M- locus of the dioecious plant asparagus Telgmann-Rauber et al
Use of FISH in sequencing tomato chromosome 6 René Klein Lankhorst Hans de Jong Korea meeting 2007.
Chromosomal Structure and Chromosomal Mutations
Chromosomes Chapter 13.
Zoo-352 Principles of genetics Lecture 3 The cell cycle and its checkpoints.
EU-SOL 2008 November 13-16, Toulouse, FRANCE CHROMOSOME 7 SEQUENCING Current status and perspective TG216 TG438 T1112 T1355 T1328 T1428 T1962 T1414 T1497.
Presentation on genome sequencing. Genome: the complete set of gene of an organism Genome annotation: the process by which the genes, control sequences.
Update tomato chr. 6 Roeland van Ham Centre for BioSystems Genomics The Netherlands.
Evolution: Fact and Theory  Fact: Species change over time.  Theory: Species arise from common descent through natural selection  Random mutations lead.
Eukaryotic Genomes Demonstrate Sequence Organization Characterized by Repetitive DNA Honors Genetics Lemon Bay High School
Large Scale Variation Among Human and Great Ape Genomes Determined by Array Comparative Genomic Hybridization Devin P. Locke, Richard Segraves, Lucia Carbone,
Chapter 11: An Introduction to Human Genome.  A linear polynucleotide consisting of four types of monomeric nucleotides  Each nucleotide contains: 
©2000 Timothy G. Standish John 15:4 4Abide in me, and I in you. As the branch cannot bear fruit of itself, except it abide in the vine; no more can ye,
Copyright © 2009 Pearson Education, Inc. Art and Photos in PowerPoint ® Concepts of Genetics Ninth Edition Klug, Cummings, Spencer, Palladino Chapter 12.
Chapter 2 DNA Biology Review ©2002 Academic Press.
Copyright © 2009 Pearson Education, Inc. Chapter 12 DNA Organization in Chromosomes Copyright © 2009 Pearson Education, Inc.
The Organization of Cellular Genome Asmarinah Department of Medical Biology.
DNA PACKAGING. 8 histones make up the nucleosome core DNA wraps twice around the 8 histones Histone 1 helps maintain the nucleosome DNA is negatively.
Current Sequencing Status of Tomato Chromosome 2 PLANT GENOME RESEARCH CENTER, KRIBB, KOREA Sanghyeob Lee Sung-Hwan Jo Dal-Hoe Koo Chul-Goo Hur Hong-Seok.
4th Solanaceae Genome Workshop 2007, September 09th- 13th, Jeju Island, Korea THE FRENCH CONTRIBUTION TO THE INTERNATIONAL TOMATO GENOME SEQUENCING PROGRAM.
Chromosomes and chromatin
Chromosome 2 Doil Choi, Sunghwan Jo KOREA. Cytological architecture of chromosome kb/µm DAPI (4’-6-diamidino-2-phenylindole) stained pachytene chromosome.
HeterochromatinEuchromatin Relative chromosome length Relative bivalent diameter X 1.23 X 1.00 Relative area Relative optical density.
1 Important terminology Gene: a segment of DNA that codes for a protein (or an RNA) Locus: the place on a chromosome where the gene is located Allele:
Lindsay A. Shearer1, Lorinda K
Genomics Chapter 18.
L.S. Rector 1, N.A. Yamada 2, M.E. Aston 1, M.C. Sederberg 1 R.A. Ach 2, P. Tsang 2, E. Carr 2, A. Scheffer-Wong 2, N. Sampas 2, B. Peter 2, S. Laderman.
Chapter 5 Sequence Assembly: Assembling the Human Genome.
1 Chapter 2 Genome Organization and Gene Expression.
Physical Mapping of the ASGR-Carrier Chromosome Reveals Collinearity to Chromosome 2 of Sorghum and Foxtail Millet Outside the ASGR Sirjan K. Sapkota,
Karyotyping.
Fluorescence in situ hybridization (FISH). Figs
Example of a common SNP in dogs
Lisa Edelmann, Raj K. Pandita, Bernice E. Morrow 
DNA Organization in Chromosomes
Tracy I. George, Joanna E. Wrede, Charles D. Bangs, Athena M
J. Catalán, K. Autio, E. Kuosma, H. Norppa 
Clustered 11q23 and 22q11 Breakpoints and 3:1 Meiotic Malsegregation in Multiple Unrelated t(11;22) Families  Tamim H. Shaikh, Marcia L. Budarf, Livija.
Sequencing update of tomato chromosome 3 Chinese Academy of Sciences
THE ORGANIZATION AND CONTROL OF EUKARYOTIC GENOMES
Remodeling of Three-Dimensional Organization of the Nucleus during Terminal Keratinocyte Differentiation in the Epidermis  Michal R. Gdula, Krzysztof.
Fast multicolor primed in situ protocol for chromosome identification in isolated cells may be used for human oocytes and polar bodies  Franck Pellestor,
Integrated Cytogenetic Map of Chromosome Arm 4S of A. thaliana
Tomato FISH Song-Bin Chang Suzanne Royer Lorrie Anderson Steve Stack.
Bassem A. Bejjani, Lisa G. Shaffer 
Genomic Technologies and the New Era of Genomic Medicine
Volume 1, Issue 5, Pages (September 2008)
David C. Page  The American Journal of Human Genetics 
Molecular and Fluorescence In Situ Hybridization Characterization of the Breakpoints in 46 Large Supernumerary Marker 15 Chromosomes Reveals an Unexpected.
Volume 52, Issue 4, Pages (November 2013)
4.1 – Chromosomes, Genes, Alleles, and Mutations
The Role of Fluorescence in situ hybridization (FISH)
Physical mapping Physical localisation on a chromosome
Juan Guan, Harrison Liu, Xiaoyu Shi, Siyu Feng, Bo Huang 
Multiple Choice Quiz.
Determine whether the sequence converges or diverges. {image}
Linkage, crossing over and chromosomal mapping (2).
Turn to the person sitting next to you and discuss the following questions:
The Variant inv(2)(p11.2q13) Is a Genuinely Recurrent Rearrangement but Displays Some Breakpoint Heterogeneity  Ina Fickelscher, Thomas Liehr, Kathryn.
Junko Kanoh, Mahito Sadaie, Takeshi Urano, Fuyuki Ishikawa 
Comparative genomic expressive hybridisation detection and quantification. Comparative genomic expressive hybridisation detection and quantification. (A)
Telomere Protection without a Telomerase
Volume 87, Issue 1, Pages (October 1996)
Distribution of γ-H2AX foci on metaphase spreads from BLM-proficient and BLM-deficient cells. Distribution of γ-H2AX foci on metaphase spreads from BLM-proficient.
Volume 14, Issue 3, Pages (March 2001)
Volume 103, Issue 5, Pages (November 2000)
Presentation transcript:

These images illustrate results of in situ hybridization with eight tomato BACs. Putative locations for the BACs are included in the captions. All of these experiments were performed without CISS hybridization. On the basis of these results, two of the BACs (045N22, 098L02) appear to contain only single-copy sequences. The other six contain multiple-copy sequences present either predominantly in the pericentromeric heterochromatin of all of the chromosomes (007K09, 098L02, 251G05, 060G11) or at multiple telomeric locations (209L16, 216M19). One of the BACs having multiple-copies sequences in the pericentromeric heterochromatin (177F12) also has a locus of hybridization at the telomere of the long arm of Chromosome 2. We are currently performing additional experiments with these BACs using CISS hybridization with Cot100 tomato genomic DNA to determine whether their single-copy sequences can be located specifically. Stack Lab--April 8,2005

045N22 (Chromosome 12—Telomere P)

098L02 (Chromosome 6—Telomere Q)

007K G05 (both Chromosome 6--Centromere)

007K09 251G05 Same SC spread as previous slide

007K09 (FITC, Chr. 6--Centromere) + 177F12 (TRITC, Chr. 2—Telomere Q) Arrow indicates label at telomere of long arm of Chromosome 2 Chr. 2

007K09 177F12 Same SC spread as previous slide

251G05 (Chromosome 6- Centromere)

060G11 (Chromosome 2—Telomere P)

216M19 (Chromosome 8—Telomere P)

209L16 (Chromosome 3—Telomere P)