Workshop Visualization of Biological Complexes October 11-12, 2003.

Slides:

Advertisements

Similar presentations

Structure Visualization UCSF Chimera José R. Valverde CNB/CSIC © José R. Valverde, 2014 CC-BY-NC-SA.

Advertisements

Lime is… …an interactive visual analysis tool connected to Dynamics NAV Graphical representation of NAV data in your browser Real-time visualization of.

© Franz Kurfess Project Topics 1 Topics for Master’s Projects and Theses -- Winter Franz J. Kurfess Computer Science Department Cal Poly.

TAU Parallel Performance System DOD UGC 2004 Tutorial Allen D. Malony, Sameer Shende, Robert Bell Univesity of Oregon.

Welcome!. Goals XLDB Goals 1.Identify trends, commonalities and major roadblocks related to building extremely large databases 2.Bridge the gap between.

1RADAR – Scheduling Task © 2003 Carnegie Mellon University RADAR – Scheduling Task May 20, 2003 Manuela Veloso, Stephen Smith, Jaime Carbonell, Brett Browning,

Grand Challenges Robert Moorhead Mississippi State University Mississippi State, MS 39762

Muon Acceleration RF Workshop Introduction October 15, 2007 Alan Bross.

3/18/2005 UCSF Chimera Workshop Resource for Biocomputing, Visualization, and Informatics University of California at San Francisco Scooter Morris U C.

Algorithm Animation for Bioinformatics Algorithms.

The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Molecular and MotifSpace Visualization Toolkit : RasCtrl Jingdan Zhang.

1 BrainWave Biosolutions Limited Accelerating Life Science Research through Technology.

Human-Computer Interaction in Biodiversity Informatics Workshop in association with the 22 nd annual HCIL Symposium and Open House Sponsored by NBII and.

Annual SERC Research Review - Student Presentation, October 5-6, Extending Model Based System Engineering to Utilize 3D Virtual Environments Peter.

Planetary Science Archive PSA User Group Meeting #1 PSA UG #1  July 2 - 3, 2013  ESAC Welcome and Logistics.

NATIONAL PARTNERSHIP FOR ADVANCED COMPUTATIONAL INFRASTRUCTURE Discovery Environments Susan L. Graham Chief Computer Scientist Peter.

Number of released entries Year. Growth of Molecular Complexity Number of Chains Year Number of Structures Containing that Number of Chains.

Abstract Visualization of protein structural data is an important aspect of protein research. Incorporation of genomic annotations into a protein structural.

Erice 2008 Introduction to PDB Workshop From Molecules to Medicine: Integrating Crystallography in Drug Discovery Erice, 29 May - 8 June Peter Rose

23 rd August 2005CCP4 Workshop IUCr 2005 Florence Italy 1 N6: A Protein Crystallographic Toolbox: The CCP4 Software Suite and PDB Deposition Tools IUCr.

FKCC Library Overview Welcome to the Florida Keys Community College’s Learning Resources Center / Library Our mission is to connect students and faculty.

Innovations in Mathematics Education Via the Arts BIRS, Banff, Jan 2007.

23 rd August 2005CCP4-RCSB Workshop IUCr 2005 Florence Italy 1 N6: A Protein Crystallographic Toolbox: The CCP4 Software Suite and RCSB PDB Deposition.

U.S. Department of the Interior U.S. Geological Survey Next Generation Data Integration Challenges National Workshop on Large Landscape Conservation Sean.

Welcome to Protein 3D Structure Visualization and Structural Bioinformatics ! Please go ahead and get started: Use the Google Chrome browser. If you don’t.

Issues Surrounding the Use of Open-Source PyMOL to Visualize Large Complexes Warren L. DeLano, Ph.D. DeLano Scientific LLC.

1 PyMOL Evolutionary Trace Viewer 1.1 Lichtarge Lab Sept. 13, 2010.

Speaker: Shau-Shiang Hung( 洪紹祥 ) advisor :Shu-Chen Cheng( 鄭淑真 ) Date : 2010/4/8 Computer Graphics and Applications, IEEE Publication Date : March-April.

Object-Oriented Analysis and Design An Introduction.

Interactive visualization of data as a feature of online crystallography journal articles CODATA Conference 2008 Brian McMahon International Union of Crystallography.

International Workshop Magnetic Phenomena in Micro- and Nano-Structures 27–29 May Donetsk, Ukraine.

IRaster (using iPipeLine) Liz Stuart and Roy Tucker The Visualization Lab University of Plymouth.

Workshop on Structural and Computational Proteomics of Biological Complexes.

Data Integration and Management A PDB Perspective.

Master of Science in Biological Informatics PROGRAM DESCRIPTION The MS in Biological Informatics program program aims.

APPLY FUNCTIONAL MODELING TO CONSEQUENCE ANALYSIS IN SUPERVISION SYSTEMS Present by Xinxin Zhang 1 Morten Lind 1, Giulio Gola 2,

Enabling Access to Sound Archives through Integration, Enrichment and Retrieval Annual Review Meeting - Introduction.

Workshop Structural Proteomics of Biological Complexes.

Structural Models Lecture 11. Structural Models: Introduction Structural models display relationships among entities and have a variety of uses, such.

A collaborative tool for sequence annotation. Contact:

Real World Experiences in Operating a Collaboratory: The Protein Data Bank Helen M. Berman Board of Governors Professor of Chemistry.

Jim Hurrell Director Climate and Global Dynamics Division Climate and Ecosystem Community Planning Meeting November 2-3, 2005 Boulder,

© 2005 IBM Corporation Discovering the Value of SOA with WebSphere Process Integration SOA on your terms and our expertise Building a Services Oriented.

Routine authoring and publication of enhanced figures IUCr submission for the ALPSP Award for Publishing Innovation 2008.

Capstone Project Fall Course Information Instructor Ye Zhao –Office: MSB 220 – Fall 2015 (MSB162) –Time: Tue, Thu 10:45am.

Soon Joo Hyun Database Systems Research and Development Lab. US-KOREA Joint Workshop on Digital Library t Introduction ICU Information and Communication.

The iPlant Collaborative Community Cyberinfrastructure for Life Science Tools and Services Workshop BISQUE.

CSC, Dec.15-16,2005. Cytoscape Team Trey Ideker Mark Anderson Nerius Landys Ryan Kelley Chris Workman Past contributors: Nada Amin Owen Ozier Jonathan.

2014 OpenSpecimen Meeting Washington University School of Medicine St. Louis, MO.

Go to workshops.molviz.org Find today’s workshop and click on Syllabus Today’s syllabus will remain online indefinitely. In our Syllabus, do steps 1-4:

GenMAPP 2 Margie Doyle and Andrew Forney Loyola Marymount University 10/19/10.

High Risk 1. Ensure productive use of GRID computing through participation of biologists to shape the development of the GRID. 2. Develop user-friendly.

Welcome To Oakland University and the School of Education and Human Services.

Visualization in Scientific Computing (or Scientific Visualization) Multiresolution,...

Canadian Bioinformatics Workshops

Welcome to the 2009 SSE Service Providers Workshop ESA - ESRIN, Frascati, Rome.

Lecture 1.01 Developing the Tools Montreal 2004 Course Introduction John J. Salama.

Introduction of Scratch (1/4) You can find Scratch on the Web:

The National Science Foundation Independent Federal Agency Support for all fields of fundamental science and engineering.

Let’s get started! Go to workshops.molviz.org

Let’s get started! Go to workshops.molviz.org

J.B. Rosenzweig and Y-K. Kim

Understanding Conservation Management Plans

Let’s get started! Go to workshops.molviz.org

CCP4-PDB Workshop ACA 2004 Chicago

化工学院第七届国际交流月系列讲座邀请人：王文俊化学工程与生物工程学院化学工程联合国家重点实验室（浙江大学）

Welcome to Training at LAL

Margie Doyle and Andrew Forney Loyola Marymount University 10/19/10

Breaking out of 2D: Interactive PDFs

N6: A Protein Crystallographic Toolbox:

Presentation transcript:

Workshop Visualization of Biological Complexes October 11-12, 2003

Goals Review technology in visual biology Define future needs in visualization of biological complexes in research labs Define challenges & solutions in sharing 3-D structures of complexes in public domain What types of resources are needed? What are the funding options to meet the research challenges in visual biology and bioinformatics?

9:00 am Chiu: Welcome and Introduction 9:15 am Berman Group: Challenges in Visualization of Complexes in PDB 10:05 am Coffee break 10:30 am Chiu Group: Structural Features Extraction and Animation of Complexes 11:20 am Sali Group: Modeling the Structures of Macromolecular Assemblies 12:10 pm Lunch Break

1:30 pm Bajaj Group: Quantitative Visualization of Static and Dynamic Biological Complexes 2:20 am David Goodsell, Michel Sanner, Art Olson: Representation, Implementation and Interaction: Challenges for Macromolecular Assemblies 3:10 pm Break 3:30 pm Ferrin Group: Multiscale Structural Modeling with UCSF Chimera and Data Quality Problems in Virus PDB Models 4:20 pm Carazo Group: Alternative Representation of Complexes

5:10 pm Chiu: General Discussions 6:00 pm Happy Hour 6:30 pm Dinner in the East Ocean Restaurant, 3199 Powell, Emeryville

October 12 (Sunday) 8:45 am Moreland Group: MBT - A Java Toolkit for Molecular Visualization 9:35 am Delano Group: Issues Surrounding the Use of Open-Source PyMOL to Visualize Large Complexes 10:25 am Break 11:00 am Berman: General Discussions and Possible Future Collaborations 12:30 pm End

Few Logistics Meals Room Charge Travel reimbursement Wireless Connection

Summary Problems in annotating complexes in PDB New user interface for visualization to make visualization for “dummy” New algorithms for quantitative visualization and representation Cryo-EM (4-20 A) structures are expanding and need institutionalized archiving Modeling tools are maturing to provide informative models for biologists Continue an annual meeting and periodic video conferencing Organize a special issue of papers in a journal