NA-MIC National Alliance for Medical Image Computing Training & Outreach Sonia Pujol, PhD Co-P.I. Randy Gollub, MD, PhD P.I.

National Alliance for Medical Image Computing 16 workshops delivered at 9 different universities Harvard Medical School, Feb-March-Apr-May 2010 University of Iowa, April 2010 MIT Project Week, June 2010 St Louis University, July 2010 Duke University, August 2010 UNC, August 2010 HST Harvard-MIT, October 2010 UCLA, November 2010 UCSF, November 2010 Workshops at national venues © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing Iowa DBP Training Workshop 2-day workshop combining lectures and hands-on tutorials Parallel user and developer sessions 65 participants University of Iowa, April 2010 © 2011 All Rights Reserved National Alliance for Medical Image Computing Special Thanks to Vince Magnotta and Hans Johnson

National Alliance for Medical Image Computing UCLA DBP Training Workshop Interactive editing, image registration, ABC segmentation Processing of TBI cases using NA-MIC tools Slicer Registration Library TBI Case UCLA November 2010 © 2011 All Rights Reserved National Alliance for Medical Image Computing Special Thanks to Jack Van Horn and Dominik Meier

National Alliance for Medical Image Computing National Alliance for Medical Image Computing © 2011 All Rights Reserved Program Interactive Editing Diffusion Tensor Imaging Image-guided Therapy Events Washington University in St Louis, July 2010: 38 participants Duke, Aug. 2010: 27 participants UNC, Aug. 2010: 43 participants  Total of 108 participants Summer Training Workshops at partner sites A.Golby, P.Black, R.Kikinis Special Thanks to Allan Johnson and Martin Styner

National Alliance for Medical Image Computing © 2011 All Rights Reserved National Alliance for Medical Image Computing Integration with Harvard Catalyst 7 hands-on training courses at Harvard Medical School attended by 85 clinicians and scientists. Course topics include 3D Visualization, Registration & PET/CT analysis Partnership with the NIH NCRR funded (CTSAs) national Imaging Working Group

National Alliance for Medical Image Computing Integration with Harvard Catalyst © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing HST.583 Course Harvard-MIT Health Science and Technology Diffusion Tensor Imaging Analysis Diffusion Tensor Imaging Lab Life Cycle of Medical Imaging Data Lab © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing Outreach event at UCSF Full Day workshop at UCSF 3D Visualization, Registration, DTI MR Spectroscopy module in Slicer, Jason Crane, PhD 60 participants © 2011 All Rights Reserved National Alliance for Medical Image Computing Special Thanks to Sarah Nelson and Jason Crane

National Alliance for Medical Image Computing Feedback © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing © 2011 All Rights Reserved National Alliance for Medical Image Computing Slicer3.6 Compendium NA-MIC Training Compendium & Workshops

National Alliance for Medical Image Computing New Core tutorials for users ‘ Interactive Editing tutorial’ ‘3D visualization of Liver Anatomy’ ‘EM Segmentation simple mode’ ‘EM Segmentation advanced mode’ ‘OpenIGTLink’ Slicer3.6 Compendium © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing Slicer3.6 Compendium New tutorial for developers Command-line plug-in in Python Presented at MICCAI 2010 NA- MIC workshop © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing © 2011 All Rights Reserved National Alliance for Medical Image Computing Tutorial Contests Winter Project Week 2009, Salt Lake City Summer Project Week 2009, 2010 – Boston New set of rules and submission process New reviewing guidelines 16 submitted hands-on tutorials and datasets

National Alliance for Medical Image Computing © 2011 All Rights Reserved National Alliance for Medical Image Computing Slicer3.6 Compendium New specialized tutorials Robust Statistics Segmenter, Georgia Tech Meshing Workflow, University of Iowa, Knowledge Vis, Isomics Fiducials, BWH Longitudinal Lesion Comparison, UNC Robust-Assisted MR-Guided Prostate Biopsy, Queen’s University, BWH Atlas Label Fusion & Surface Registration, BWH Perk Station Module, Queen’s University, JHU Stochastic Tractography, PNL

National Alliance for Medical Image Computing Slicer3.6 Compendium 8 new specialized Slicer3.6 tutorials done by DBPs teams in response to the tutorial contests © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing Quality Control Effort: Journal of Slicer Tests © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing Quality Control Effort: Slicer 101 Test Table © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing Quality Control Effort: Journal of Slicer Workshop Tests © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing © 2011 All Rights Reserved National Alliance for Medical Image Computing Dissemination Update Slide courtesy of Tina Kapur, Ph.D., Co-PI Steve Pieper, Ph.D., Co-PI 10 th Project Week: Salt Lake City, Utah, Winter attendees: 22 academic institutions, 10 companies 49 Projects: Segmentation, Registration, IGT, Radiotherapy, Informatics, DTI, Engineering 11 th Project Week: MIT, Summer attendees: 30 academic institutions, 15 companies, 16 states, 9 countries 71 Projects: Segmentation, Registration, Shape Analysis, Diffusion, IGT, Radiotherapy, Microscopy, Engineering Active participation by companies: Nokia and Brainlab to share expertise in QT and Surgical Navigation.

National Alliance for Medical Image Computing DTI Validation Project Update Comparison of DTI tractography algorithms in the absence of ground truth Characterization of different DTI tractography approaches © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing STAPLE Validation Pipeline Warfield SK, Zou KH, Wells WM. Simultaneous Truth and Performance Level Estimation (STAPLE): An algorithm for the Validation of Image Segmentation. IEEE Trans Med Imaging. 23(7): © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing New modeling Previous approach: Tractography results represented by binarized voxels New development: Tractography results represented by visitation counts Collaboration with Sandy Wells, BWH © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing DTI Validation Project New tractography phantom for comparing algorithms New statistical modeling of uncertainty Focus on ‘validating the validation method’ © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing NA-MIC OUTREACH EVENTS AT INTERNATIONAL VENUES © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing IGT Workshop, Tokyo, Japan “Image Guided Therapy Research using Open Source Free Software” Tokyo Women's Medical University 50 participants © 2011 All Rights Reserved National Alliance for Medical Image Computing Special Thanks to Noby Hata

National Alliance for Medical Image Computing CARS 2010, Geneva, Switzerland “NA-MIC Open-source tools for IGT research” 15 participants from 9 different countries- Spain, Scotland, Sweden, Portugal, Italy, US, Australia, Norway Tunisia. © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing NA-MIC Workshop in the UK Manchester, Dec.8, 2010 Dundee, Dec.9, 2010 –Quantitative Measurement of Volumetric Change: ChangeTracker Tutorial –Quantitative Measurement for Functional Imaging: PET-CT Fusion Tutorial –Open-IGT © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing RSNA 2010 Largest medical conference in the world - 60,000 participants NA-MIC presence: -2 Refresher courses -3DSlicer Booth © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing © 2011 All Rights Reserved National Alliance for Medical Image Computing RSNA 2010: Slicer Booth “3D Slicer: An Open Source Application for Registration, Segmentation, Quantitative Analysis, and Visualization of Biomedical Image Data” 5-day "Meet the Experts" session Nov.29 – Dec.3, 2010

National Alliance for Medical Image Computing Liver Course RSNA 2010 Gunshot case 16 year-old patient 70 international attendees Joint work with Dr. Kitt Shaffer, BU Medical Center, 2010 RSNA Outstanding Educator Award Recipient © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing From MICCAI Algorithms to Clinical Translational Tools: The NA-MIC Platform Clinical Translational Workshop for scientists © 2011 All Rights Reserved National Alliance for Medical Image Computing One Full-Day Workshop on NA-MIC tools for Clinical Translational Research

National Alliance for Medical Image Computing Clinical Translational Workshop for radiologists Joint Workshop on Quantitative Medical Imaging for Clinical Research and Practice - RSNA 2010, Chicago, IL 1.5 hour course with more than 100 international attendees © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing NA-MIC Invited Workshop at the PLA General Hospital, Beijing General Hospital of the People’s Liberation Army Largest military hospital in China 4,000 beds, 2.5 million outpatients per year 50 medical centers © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing NA-MIC Invited Workshop at the PLA General Hospital, Beijing One-day NA-MIC hands-on workshop 3D Visualization, DTI and computer-assisted neurosurgery 10 PLA neurosurgeons © 2011 All Rights Reserved National Alliance for Medical Image Computing Special Thanks to Michael Chen, MD

National Alliance for Medical Image Computing Future Directions Expand NA-MIC presence at national and international venues New Compendium for Slicer4 Quality Control: Automated GUI testing for Slicer4 –Integration of a GUI testing framework into Slicer4 –Development of nightly automated tutorial testing © 2011 All Rights Reserved National Alliance for Medical Image Computing

National Alliance for Medical Image Computing outreach events: 16 workshops at national venues 9 workshops at international events

National Alliance for Medical Image Computing outreach events: 16 workshops at national venues 9 workshops at international events 635 NA-MIC training workshop participants

National Alliance for Medical Image Computing outreach events: 16 workshops at national venues 9 workshops at international events 635 NA-MIC training workshop participants 233 NA-MIC project week participants

National Alliance for Medical Image Computing : 1555 scientists and clinicians trained by NA-MIC