Scott M. Blankenship Contributing Authors Gabriel M. Temple and Cherril Bowman Yakima Basin Science and Management Conference 2009.

Slides:

Advertisements

Similar presentations

RTT Analysis Workshop Species Status and Trend (Chapter 1) Casey Baldwin RTT Chairperson WDFW Research Scientist.

Advertisements

Natural Reproductive Success and Demographic Effects of Hatchery-Origin Steelhead in Abernathy Creek, Washington Abernathy Fish Technology Center U.S.

Salmonid Natural Production Monitoring & Evaluation Project Confederated Tribes of the Umatilla Indian Reservation BPA Project #

Investigate Re-establishing Anadromous Fish Populations Above Man-made Barriers Oregon Department of Fish and Wildlife Willamette Basin.

Assessment of A-run Steelhead population in the Clearwater Nez Perce Tribe Department of Fisheries Resources Management.

Monitoring and Evaluation of Yearling Fall Chinook Salmon Released Upstream of Lower Granite Dam Nez Perce Tribe Department of Fisheries Resources Management.

U.S. Department of Energy Pacific Northwest National Laboratory Evaluation of Juvenile Salmonid Culvert Passage SM Anglea, GD Williams, KD Ham, and GA.

Lower Snake River Compensation Plan Hatchery Evaluations – Salmon River Project No Nez Perce Tribe Department of Fisheries Resources Management.

Assessment of Bull Trout Populations in the Yakima River Watershed.

Spatial scales of homing and the efficacy of hatchery supplementation of wild populations Northwest Fisheries Science Center National Marine Fisheries.

CSMEP Goal: Improve the quality and consistency of fish monitoring data, and the methods used to evaluate these data, to answer key questions relevant.

The Effects of Domestication on Competitive Dominance of Juvenile Spring Chinook Salmon Todd Pearsons, Anthony Fritts, Jennifer Scott, and Jordan Vandal.

Redband Trout: Cultural Past, Present and Future

C. A. Peery, M. L. Keefer, and S. R. Lee Idaho Cooperative Fish and Wildlife Research Unit U.S. Geological Survey and Northwest Fisheries Science Center.

Spatial and Temporal Distribution of Adult Summer Steelhead in Asotin Creek, Washington Ethan Crawford and Michael Herr Washington Department of Fish &

Coordination of Tag and Mark Recovery Programs Dan Rawding WDFW.

Using genomics to study segregated hatchery effects in western Washington steelhead Sewall F. Young 1,2 Kenneth I. Warheit 1,2 James E. Seeb 2 1 Washington.

Resident Fish Above Chief Joseph and Grand Coulee Dams Project No Kalispel Tribe of Indians Washington Department of Fish and Wildlife Spokane.

Why are color patterns in red- tailed hawks so polymorphic? Ferruginous Hawk.

MANAGEMENT AND RESEARCH OF KALAMA RIVER STEELHEAD WASHINGTON DEPARTMENT OF FISH AND WILDLIFE KALAMA RESEARCH TEAM PAT HULETT CAMERON SHARPE CHRIS WAGEMANN.

Variation in Straying Patterns and Rates of Snake River Hatchery Steelhead Stocks in the Deschutes River Basin, Oregon Richard W. Carmichael and Tim Hoffnagle.

Emigration behavior of resident and anadromous juvenile O. mykiss: exploring the interaction among genetics, physiology and habitat Sean Hayes, Chad Hanson,

Yakima Basin Science & Management Conference – 2010.

Chris Bare, Jim Latshaw, Ian Tattam, Jim Ruzycki, and Rich Carmichael Estimating Chinook escapement to the John Day River basin using a mark-recapture.

Documenting O. mykiss life histories in the White Salmon River prior to the reintroduction of anadromous fish above Condit Dam. Brady Allen and Patrick.

Monitor and Evaluate Salmonid Production in the Asotin Creek Subbasin - LSRCP (ID #200116)

DNA-Based Pedigree Analysis of Chinook Salmon from the Yakima River Todd W. Kassler, Scott M. Blankenship, Kenneth I. Warheit, and Craig A. Busack Washington.

Brian Hodge Peggy Wilzbach Walt Duffy James Hobbs Partial Migration in Wild Oncorhynchus mykiss from the Lower Klamath River Basin USGS California Cooperative.

Life History of Western Washington Winter Steelhead, a 30 Year Perspective Hal Michael Washington Department of Fish and Wildlife

Lewis River Fish Passage Monitoring and Evaluation Plan (draft)

Pacific Coast Steelhead Management Meeting What Are Managers Required to Provide Their Constituents? March 9-11, 2004 Bob Leland.

Population Genomics of Coastal California Resident and Anadromous Oncorhynchus mykiss in Scott Creek, CA Devon Pearse Molecular Ecology and Genetic Analysis.

Management & Recovery Implications Of Wild/Hatchery Steelhead Interactions Within A Large, Complex Watershed Research Partners: WDFW Skagit River System.

Genetic relationships among resident and anadromous O. mykiss in Cedar River, WA Anne Marshall, Maureen Small, Steve Foley Washington Department of Fish.

Lower Snake River Comp Plan M & E Program SPY’s thoughts based on 3 weeks.

Estimating Steelhead Redd Abundance and Variance in the Wenatchee River Basin Andrew Murdoch WDFW Chad Herring WDFW Kevin See QCI Chris Jordan NOAA.

Contribution of Resident O. mykiss to Anadromous Populations and Vice Versa: Implications for Recovery Strategies and VSP Analysis Richard W. Carmichael.

Effectiveness of alternative broodstock, rearing and release practices at Winthrop NFH William Gale and Matt Cooper -USFWS, Mid-Columbia River Fishery.

Relationships between resident and anadromous O. mykiss in Cedar River, WA: Anne Marshall WA Dept of Fish and Wildlife improving the chances for steelhead.

Genetic Stock Structure of Skagit River Basin winter steelhead Todd W. Kassler and Kenneth I. Warheit Washington Department of Fish and Wildlife March.

Steelhead Genetic Diversity at Multiple Spatial Scales in the Snake River Basin, Idaho Authors: Jennifer L. Nielsen 1, Alan Byrne 2, Sara L. Graziano 1.

Steelhead Kelt Reconditioning Program Update Presented by: Bill Bosch, Yakama Fisheries Acknowledgements: D. Fast, M. Johnston, T. Newsome Prosser Hatchery.

Adult steelhead evaluations in Imnaha River tributaries William Young, Jocelyn Hatch Nez Perce Tribe Department of Fisheries Resources Management.

Taneum Creek Coho/NTT Interactions Gabriel Temple.

Genetic impacts of hatchery stocks on Steelhead in Lower Cowlitz tributaries Anne Marshall, Maureen Small, and Julie Henning Washington Department of Fish.

Washington State Steelhead Stock Status Review PACIFIC COAST STEELHEAD MEETING AMILEE WILSON WASHINGTON DEPARTMENT OF FISH & WILDLIFE MARCH 2004.

Variation in the effectiveness of alternative broodstock, rearing, and release practices among three supplemented steelhead populations - Hood Canal, WA.

October 20 & 21, 2009 Stevenson, WA Columbia Basin Coordinated Anadromous Monitoring Strategy Workshop Lower Columbia Sub-Basin.

Yakima O. mykiss Modeling Workshop Ian Courter Casey Justice Steve Cramer.

Joe Bumgarner Washington Department of Fish and Wildlife.

Movement of Resident Trout Transplanted Below a Barrier to Anadromy Peggy Wilzbach Mark Ashenfelter USGS California Cooperative Fish Research Unit, Humboldt.

Yakima Steelhead VSP Project: Resident/Anadromous Interactions Gabriel M. Temple 1913 “Landlocked Steelhead”

Steve Cramer Casey Justice Ian Courter Environmental drivers of steelhead abundance in partially anadromous Oncorhynchus mykiss populations.

Genetic and Phenetic Dynamics of Steelhead Recolonization Above Dams: Green River Study Gary Winans CB Division Jon Baker, Frank Orth Assoc. (Formerly,

Oncorhynchus mykiss : The Quandary of a Highly Polymorphic Species under the U.S. Endangered Species Act by: Kathryn Kostow Oregon Department of Fish and.

RTT Analysis Workshop Synthesis: Data Gaps and Research Needs (Chapter 5) Presented by Keely Murdoch MaDMC Chair Yakama Nation.

Upstream passage success rates and straying of returning adults Presenter: Jack Tuomikoski CSS Annual Meeting Apr 2 nd 2010.

Natural Reproductive Success of First-generation Hatchery Steelhead Spawning in the Kalama River CAMERON SHARPE PAT HULETT CHRIS WAGEMANN MAUREEN SMALL.

Steelhead Kelt Reconditioning Program Update Presented by: Dave Fast, Yakama Fisheries Acknowledgements: B. Bosch, M. Johnston, T. Newsome Prosser Hatchery.

DNA-Based Pedigree Assignments of Chinook Salmon from the Yakima River Todd W. Kassler, Scott M. Blankenship, Kenneth I. Warheit, and Craig A. Busack Washington.

Application of Genetic Baseline: Aiding the Recovery of Steelhead

Yakima River Steelhead Status and Trends RM&E Project Overview:

Taneum Creek PIT Tag Interrogation Site

DNA-Based Pedigree Analysis of Chinook Salmon from the Yakima River

On Recruitment of Steelhead in Mid Columbia Subbasins

Hatchery Production Wells Hatchery Steelhead: 450,000 fish annually

Columbia Basin Coordinated Anadromous Monitoring Strategy Workshop

Risk Management of Non-target Fish Taxa as Related to Salmon Supplementation Presented by: Gabriel M. Temple.

Maternal Life-History Type and Natal Rearing Origin of Adult Steelhead in the Yakima Basin David Child DC Consulting, L.L.C. Ian Courter Cramer Fish.

Eagle Fish Genetics Lab (IDFG): Craig Steele Mike Ackerman

Presentation transcript:

Scott M. Blankenship Contributing Authors Gabriel M. Temple and Cherril Bowman Yakima Basin Science and Management Conference 2009

Outline Background/Concept Project Description Genetic Results Conclusions/ Future Applications

Background Previous genetic studies have documented genetic differences among Yakima River steelhead populations Genetic studies have generally found little evidence of genetic interactions between steelhead and non-native hatchery O. mykiss (i.e., rainbow trout) stocked in the Yakima Basin Limited information is available regarding the genetic affinities between steelhead and native resident O. mykiss in the Yakima River.

Concept Adult steelhead Mature resident Juvenile migrants Investigate the genetic and geographic relationships among O. mykiss life history forms

Project Description Juveniles Radio tracking located spawning grounds Survey Pit Tag Detect Migrant Resident Adult steelhead

Collections PopulationSample size ‘06 Teanaway Migrants27 ‘07 Teanaway Migrants31 ‘08 Teanaway Migrants18 Teanaway Spawners130 ‘06 Teanaway Residents18 ‘07 Teanaway Residents137 ‘08 Teanaway Residents106 ‘08 Swauk Residents31 ‘07 Taneum Migrants9 Taneum Spawners16 ‘06 Taneum Residents19 ‘07 Taneum Residents24 ‘08 Taneum Residents49 ‘06 Manastash Residents8 ‘08 Umtanum Residents19

Genetic Analysis Genetic diversity Allelic associations Hardy-Weinberg equilibrium Linkage disequilibrium Collection comparisons Genic tests – allele frequency comparisons F ST estimation – population subdivision Overall genetic differentiation Factorial correspondence analysis

Genetic Analysis - Summary Genetic diversity high - 76% to 83% Random associations of alleles within and between genetic loci Generally, collections from the same tributary had statistically equivalent allele frequencies and F ST that were small or equivalent to zero. Generally, collections from different tributaries had statistically different allele frequencies and F ST statistically significant from zero

Factorial Correspondence Analysis Teanaway River Taneum Creek Swauk Cr. Manastash Cr. Umtanum Cr. Other Residents Adults Migrants Residents Adults Migrants Residents

Conclusions All three life history stages (i.e., residents, migrants, and anadromous adults) from the same location were more genetically similar than the same life history stage was between tributaries Residents from the five tributaries were genetically differentiated Upper Yakima River O. mykiss were genetically differentiated, where collection location appeared more informative regarding genetic affinity than life history category

Applications Acknowledge population structuring Regional context – SPAN standardized genetic baseline Fishery assessment Escapement estimation Viability analysis Residualization Interactions with cutthroat trout (O. clarki) Geospatial analysis

WDFW MGL Norm Switzler Maureen Small Jennifer von Bargen Steelhead information Yakama Nation Funding Bonneville Power Administration Washington State Fund