Commercial tools for gene list analysis Boo Virk v1.0.

Slides:



Advertisements
Similar presentations
Chapter 1 Business Driven Technology
Advertisements

1 1 Slide © 2008 Thomson South-Western. All Rights Reserved Chapter 9 Hypothesis Testing Developing Null and Alternative Hypotheses Developing Null and.
Pathways analysis Iowa State Workshop 11 June 2009.
Linking HIS and GIS How to support the objective, transparent and robust calculation and publication of SWSI? Jeffery S. Horsburgh CUAHSI HIS Sharing hydrologic.
Pathways & Networks analysis COST Functional Modeling Workshop April, Helsinki.
Basic Genomic Characteristic  AIM: to collect as much general information as possible about your gene: Nucleotide sequence Databases ○ NCBI GenBank ○
Web services for Improving the development of automatic generalisation solutions Nicolas Regnauld Research & Innovarion Ordnance Survey 07 th March 2006,
Experiences on services enabling integration of electronic resources: A to Z (EBSCO) and ScholarSFX (SFX Express with Google Scholar) Natalia Litvinova.
MIS DATABASE SYSTEMS, DATA WAREHOUSES, AND DATA MARTS MBNA
Threshold selection in gene co- expression networks using spectral graph theory techniques Andy D Perkins*,Michael A Langston BMC Bioinformatics 1.
Kate Milova MolGen retreat March 24, Microarray experiments: Database and Analysis Tools. Kate Milova cDNA Microarray Facility March 24, 2005.
August 29, 2002InforMax Confidential1 Vector PathBlazer Product Overview.
Kate Milova MolGen retreat March 24, Microarray experiments. Database and Analysis Tools. Kate Milova cDNA Microarray Facility March 24, 2005.
Biological Interpretation of Microarray Data Helen Lockstone DTC Bioinformatics Course 9 th February 2010.
Many genes have unknown function 30% have unknown function only 9% are experimentally verified The Arabidopsis Genome Initiative, Nature 2000 of the 25,498.
CBioC: Massive Collaborative Curation of Biomedical Literature Future Directions.
GCB/CIS 535 Microarray Topics John Tobias November 15 th, 2004.
Pathway Informatics 6 th July, 2015 Ansuman Chattopadhyay, PhD Head, Molecular Biology Information Services Health Sciences Library System University of.
Analyzing and Using Marketing Information
GO Enrichment analysis COST Functional Modeling Workshop April, Helsinki.
How can you benefit from the Bioinformatics Resource? Can (John) Bruce, Ph.D. Associate Director Bioinformatics Resource Keck Biotechnology Laboratory.
Pathway analysis Daniel Hurley Pathway analysis: summary A popular buzzword… but what does it mean? A popular buzzword… but what does it mean? How do.
>>> Korean BioInformation Center >>> KRIBB Korea Research institute of Bioscience and Biotechnology GS2PATH: Linking Gene Ontology and Pathways Jin Ok.
Epigenome 1. 2 Background: GWAS Genome-Wide Association Studies 3.
Work Package 2 Dissemination of the project RARECARENet Aidan Hutchison on behalf of Professor Ian Kunkler University of Edinburgh.
Bioinformatics Dr. Víctor Treviño BT4007
EGAN: Exploratory Gene Association Networks by Jesse Paquette Biostatistics and Computational Biology Core Helen Diller Family Comprehensive Cancer Center.
Multimedia. What is Multimedia? The integration of interactive elements using computer technology: __________.
Networks and Interactions Boo Virk v1.0.
Managing Data Modeling GO Workshop 3-6 August 2010.
UBio Training Courses Micro-RNA web tools Gonzalo
Med First University National College For upplied Sciences Department of computer engineering Presented by : IDMOUSSA Hasnae GOUNI Ouissam Scylla Marie.
Demystifying the Statistics Canada Website Sandra Keys DLI Bootcamp May 2011 Vancouver, BC.
GO-based tools for functional modeling TAMU GO Workshop 17 May 2010.
University of Illinois at Urbana-Champaign BeeSpace Navigator v4.0 and Gene Summarizer beespace.uiuc.edu `
United Nations Economic Commission for Europe Statistical Division The Importance of Databases in the Dissemination Process Steven Vale, UNECE.
Bioinformatics lectures at Rice University Li Zhang Lecture 9: Networks and integrative genomic analysis
K Phone: Web: A Software Package for the Design and Analysis of Microbial Functional.
Normal Distribution.
Data provenance in biomedical discovery Donald Dunbar Queen’s Medical Research Institute University of Edinburgh Workshop on Principles of Provenance in.
OWx2 Online Workspace Whizzes Share, Collaborate, Communicate A look inside team portals and web office environments Maria Morales, Betsy Dugas, Kathrine.
Pathway: a collection of genes, proteins, and /or small molecules that modulate a cellular process or disease state Growing demand in biological sciences.
Input data for analysis Users that have expression values (dataset 1_ chicken affy_foldchane.txt. can upload that file as shown in slide 30.
Data Integration & Data Mining Tool Donald Dunbar BHF CoRE Bioinformatics Team Edinburgh Bioinformatics Meeting April 2013.
Module 5: Future 1 Canadian Bioinformatics Workshops
Copyright OpenHelix. No use or reproduction without express written consent1 1.
Biosimilar (Insulin) – Competitive Landscape and Market & Pipeline Analysis, 2016 DelveInsight’s, “Biosimilar (Insulin) – Competitive Landscape and Market. Request for sample of this research report:
ELandscape Alliances eLandscape Team. Setting the Context The Goal: Analyze what are the potential alliances that eLandscape can form to maximize the.
AN INTRODUCTION TO GENE EXPRESSION ANALYSIS BY MICROARRAY TECHNIQUE (PART II) DR. AYAT B. AL-GHAFARI MONDAY 10 TH OF MUHARAM 1436.
THOMSON REUTERS PROFESSIONAL SERVICES. THOMSON REUTERS PATENT CONTENT 98% of world’s filed patents.
Microarray Technology and Data Analysis Roy Williams PhD Sanford | Burnham Medical Research Institute.
Top Benefits of Joomla in E- Learning. Flexibility - Because of Several Reasons Open Source Nature Create Custom Modules Custom Functionality To Your.
Ingenuity Pathway Analysis Alex Pico. Description "IPA is a software application that enables researchers to analyze and understand the complex biological.
Björn Brembs Universität Regensburg
Popular Database Management Systems
Microarray data collection for different stresses
Networks and Interactions
Bioinformatics Resources Provided by WV-INBRE
SPSS Assignment Help. Sage-Fox.com Free PowerPoint Templates SPSS is an abbreviation to Statistical Package for Social Science. It’s a windows based software.
The Six Parts of a GIS.
A. B. Supplemental Figure S2.  A.  Cell cycle G1/S Growth Factor Regulation.  Publically available data from (20;
Ingenuity Knowledge Base
Figure S1: Gene importance plot derived from Variable/ Feature selection using machine learning on the training dataset. MeanDecreaseGini is the measure.
A Novel Method of Amplification of FFPET-Derived RNA Enables Accurate Disease Classification with Microarrays  P. Mickey Williams, Rui Li, Nathalie A.
Pathway Informatics December 5, 2018 Ansuman Chattopadhyay, PhD
List of the benefits why WordPress is best platform for building Website.
Rey-Long Liu Dept. of Medical Informatics Tzu Chi University Taiwan
Statistical Process Control
Statistical Process Control
Bioinformatic analyses suggest that PI3K/AKT signaling may be a key downstream pathway of tazarotene signaling. Bioinformatic analyses suggest that PI3K/AKT.
Presentation transcript:

Commercial tools for gene list analysis Boo Virk v1.0

Why use commercial tools? Benefits: Each tool has their own large database Databases are updated regularly and curated All analysis can be done in one package Overlay different projects/experiments to see potential links Customer Support

Commercial tools for gene list analysis Many available – examples include:

Advaita - Only pay for reports you will publish Thomson Reuters – more focussed on human diseases and drug discovery Agilent Technologies – integrated with Ingenuity Pathway Analysis (IPA) and Metacore

Commercial tools for gene list analysis Many available – examples include:

Ingenuity Pathway Analyser (IPA®)

Top Pathways

Function Heatmap

Identify potential upstream regulators

Networks

Summary Report NOTE: IPA uses Fisher’s Exact test right tailed test – which is twice as likely to reach significance!

Analysis is no different from free tools Statistics and outputs are similar to those obtained from free web based resources £££££ Are larger databases necessarily better? Limitations of Commercial tools

Which tool to use? There are different types of software available, both free and commercial Try a few, and find the tool that’s best for your experiments and needs Using more than one tool to analyze your data may provide new insights or lend extra confidence to your results

Feedback: Privacy Policy Feedback
Do Not Sell My Personal Information
About project: SlidePlayer Terms of Service

© 2025 SlidePlayer.com. Inc. All rights reserved.