Richard Lane Barcoding and the practice of systematics.

Slides:



Advertisements
Similar presentations
The noisome weeds which without profit suck The soil's fertility from wholesome flowers. - William Shakespeare, The Tragedy of King Richard II.
Advertisements

Chapter 17 Table of Contents Section 1 Biodiversity
LG 4 Outline Evolutionary Relationships and Classification
Alberts, Bray, Hopkins, Johnson Copyright © 2004 Pearson Education, Inc., publishing as Benjamin Cummings Professor: Dr. Barjis Room: P313 Phone: (718)
Chapter 17 Table of Contents Section 1 Biodiversity
PHYLOGENY AND SYSTEMATICS
Chapter 3 The Qualitative Research Approach. WHAT IS THE INTERPRETIVE WAY OF THINKING? Multiple Realities Data vs. Information Subjects vs. Research Participants.
CHAPTER 25 TRACING PHYLOGENY. I. PHYLOGENY AND SYSTEMATICS A.TAXONOMY EMPLOYS A HIERARCHICAL SYSTEM OF CLASSIFICATION  SYSTEMATICS, THE STUDY OF BIOLOGICAL.
FOUNDATIONS OF NURSING RESEARCH Sixth Edition CHAPTER Copyright ©2012 by Pearson Education, Inc. All rights reserved. Foundations of Nursing Research,
Phylogeny & The Tree of Life. Phylogeny  The evolutionary history of a species or group of species.
Classification (taxonomy)
McGraw-Hill © 2006 The McGraw-Hill Companies, Inc. All rights reserved. The Nature of Research Chapter One.
Lesson Overview Lesson Overview Genes and Variation Genetic Drift Small populations Definition Genetic bottleneck Founder effect.
What’s it all about?. Taxonomy Classification Creating groups Use characters Systematics Phylogenetic reconstruction.
Classification of Living Things 20-3 Chapter 20. Classification of Living Things 2 Cladistic Systematics Now that we know how to read phylogenetic trees….how.
Research Methods1 Introduction Introduction to Research Course Content Assessment.
PHYLOGENY AND THE TREE OF LIFE Chapter 26 Sections 1-3 and 6.
Diversity of Living Things 1.1: Biodiversity. Biodiversity Number and variety of species and ecosystems on Earth By the end of 2010, 1.7 million species.
Structure and Function in Living Things Chapter Fifteen: The Diversity of Life 15.1 Taxonomy and Systematics 15.2 Algae and Fungi.
CLASSIFICATION OF LIFE
The History of Classification Copyright © McGraw-Hill Education Early Systems of Classification Classification is the grouping of objects or organisms.
Phylogeny & Systematics
Taxonomy.  How organisms are classified and named.
Classification and Phylogenetic Relationships
Chapter 1 Lesson 2.  Aristotle (384 BC- 322 BC)  Greek Philosopher  Classified based on two groups  Plants and Animals  Classified by the structure.
Identifying, Naming, and Classifying Species
Organizing Life’s Diversity Chapter 17. How Classification Began In order to better understand organisms scientists group them. Classification is the.
Phylogenetic analysis of flatfish species (Teleostei, Pleuronectiformes) based on cytochrome oxidase 1 (Co-1) and cytochrome b (Cyt-b) genes Sharina S.N.,
Classifying the Diversity of Life – Systematics Is the study of the diversity and relationships of organisms, both past and present. – Taxonomy Is the.
WAP workshop Nov 2009 H.J. Griffiths, R. Grant & K. Linse.
Sorting It All Out Classification of Organisms. Classification Classification is putting things into orderly groups based on similar characteristics.
I. I.Phylogeny and Systematics A. A.Cladistics Analysis of phylogenetic relationships based on shared characters Characters may be primitive or derived.
Classification of Living Things Chapter 20. Classification of Living Things 2OutlineTaxonomy  Binomial System  Species Identification  Classification.
PHYLOGENY AND THE TREE OF LIFE.  Phylogeny is the evolutionary history of a species or a group of species.  To determine how an organism is classified,
NEW CHAPTER TOPIC: TAXONOMY.
Honors Project May 2, 2013 By: Alyssa Rogers Mentor: Dr. Christopher Lane BROWN ALGAL DIVERSITY IN BERMUDA REVEALED USING MOLECULAR TOOLS.
Systematics of Clavicipitaceous Fungi Associated with Morning Glories Based on rpb1 Sequence Data Saroj Simkhada, Alyssa M. Brown, and Richard E. Miller.
Introduction to Bioinformatics Resources for DNA Barcoding
Chapter 17 Table of Contents Section 1 Biodiversity
Phylogeny and the Tree of Life
Warm Up Who was Charles Darwin?
Structure and Function in Living Things
Modern Evolutionary Classification
5.4 Cladistics.
Preview Science Concepts Using Science Graphics Writing Skills.
Phylogeny and the Tree of Life
Chapter 17 Table of Contents Section 1 Biodiversity
Variation and Classification
Classification Topic 5.3 and 5.4.
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
Phylogeny and the tree of Life
Cladistics Cladistics: classification based on common ancestry
Evidence and Phylogenetic trees
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
Classification.
Phylogeny and the Tree of Life
Author: Dr. JAWAHAR -TAXONOMY OF FINFISH
Chapter 17 Table of Contents Section 1 Biodiversity
Chapter 20 Phylogenetic Trees.
Chapter 18 Classification.
Phylogeny and the Tree of Life
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
Features of a Good Research Study
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
Phylogeny and the Tree of Life
Warm-Up Contrast adaptive radiation vs. convergent evolution? Give an example of each. What is the correct sequence from the most comprehensive to least.
For Grouping and Naming Organisms
What we think and measure when exploring inequality
Ch. 17 Biodiversity Mr. D.
Major Groupings of Organisms
Presentation transcript:

Richard Lane Barcoding and the practice of systematics

What are systematics and barcoding trying to do? Systematics Discover and delimit taxa Classify taxa based on testable relationships (phylogenetic) Provide guides to identification DNA barcoding Diagnostic Discover ‘new’ taxa Sequence data for systematic research

Relative importance of components Systematics Discover and delimit taxa Classify taxa based on testable relationships (phylogenetic) Provide guides to identification DNA barcoding Diagnostic Discover taxa Sequence data for systematic research

Concerns over DNA barcoding Barcoding : Will not distinguish all species (will not work) Diverts funds or attention Philosophically unsound (=pheneticism)

Will not distinguish all species Testable with empirical data: Plants not distinguishable by single CO1 seq Where many taxa sampled, >> 95% discriminated ‘new’ taxa indicated Species complexes not always discriminated

Diverts funds or attention [from more important elements of systematics] Funding: assumption of finite resources, competition analysable – qualitative methodology Relative importance: value-based

Philosophically unsound (=pheneticism) Only relevant if barcodes used for classification, not if used for identification

Questions?