A Draft Immunotoxicity Vocabulary for ToxRefDB

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Presentation transcript:

A Draft Immunotoxicity Vocabulary for ToxRefDB Bob Luebke Cardiopulmonary and Immunotoxicology Branch NHEERL, ORD, US EPA

Endpoint super category ToxRefDB Vocabulary Endpoint super category Endpoint category Endpoint subcategory Endpoint class Endpoint subclass Effect type Target site a Target site b Developmental Reproductive Developmental DevelopmentalMalformation Cardiovascular Heart Defect A-V Septum Septum Interventricular [Not Specified] DevelopmentalNeurotoxicity Learning and Memory Memory Maze Sector entries Radial-arm maze PathologyGross Reproductive Male Epididymis Pathology (Gross) Reduced size Left Developmental Malformation General Other Thymus Small Systemic Carcinogenic Maternal Pathology Non-Proliferative Endocrine Pathology (Non-neoplastic) Atrophy 8834 rows, endpoints for cancer, developmental and reproductive toxicity Endpoints selected to describe effects, based on toxicity data from testing hundreds of chemicals In rats and rabbits (http://actor.epa.gov/toxrefdb/faces/BasicInfo.jsp) Search by endpoint (study type, species, effect type) to return list of chemicals associated with effect (http://actor.epa.gov/toxrefdb/faces/SearchByEndpoint.jsp)

Immunotoxicity Classification Immunosuppression (immunostimulation) Allergic hypersensitivity Autoimmunity Endpoints are relevant for adult and developmental exposure effects

Immunotox Endpoint Interpretation Indicator Assessment Function Interpretation Lymphoid organ data Weights, cellularity, viability, architecture Maturation, differentiation Suggestive Cell surface markers Flow cytometry Relative distribution by function/type Suggestive/confirmatory Cytokine production mRNA, protein, activity Regulation, modulation of cell proliferation, maturation, function Innate immunity Activation, phagocytosis killing, mediator production Resistance to infection Intracellular & extracellular infection, viral infections, tumors Antibody synthesis TDAR: “PFC” or ELISA response Resistance to infection Toxin neutralization Extracellular infection, viral infections, tetanus Cell mediated immunity Delayed hypersensitivity Cytotoxicity Resistance to infection, neoplasia “Help” for Ig response Intracellular infection, viral infections, tumors Specificity, Complexity

Draft immunotox vocabulary content Borrowed entries from exiting ToxRefDB that may indicate immune system effects Added new categories, subcategories endpoint classes and subclasses, effect types and targets that may be generated in immunotoxicity studies

ToxRefDB Itox Vocabulary Endpoint super category Endpoint category Endpoint subcategory Endpoint class Endpoint subclass Effect type Target site a Target site b Immunotoxicity Adult Immunotoxicity Immuno-suppression Host resistance Bacterial challenge Humoral Immunity Infection resistance B Lymphocyte IgM Adult immunotoxicity Immune Function Cellular Immunity Infection/tumor resistance T helper 1 Lymphocyte Delayed Hypersensitivity Innate immunity Natural Killer Cell Target cell lysis Immune Observation Lymphocyte Proliferation Mitogen Response T Lymphoocyte Hematology Complete Blood Count Leukocyte Cell Number In-Life Observations Clinical Signs Skin Lesion (infection) HI ImmuneFunction Immunostimulation Stimulation Dendritic Cell Infection/Autoimmunity Allegic Hypersensitivity Antibody synthesis Anaphylaxis Lung IgE Local Lymph Node Assay Contact hypersensitivity Lymph Node Proliferation Mouse Ear Swelling Test Ear Swelling Autoimmunity Self Antigens Autoantibody Anti-dsDNA Kidney kidney Proteinuria Developmental immunotoxicity Same as adult

Next Steps and Caveats Incorporate into ToxRefDB Test ability to capture immunotox data in published studies Minimal outside input on entries Is the structure adaptable to other vocabularies?