Conservation Genetics of the Plains Topminnow, Fundulus sciadicus The plains topminnow (Fundulus sciadicus) is a freshwater killifish endemic to the Great Plains of North America (Fig. 1). Rising concerns for future viability of this species have prompted recent changes in its conservation status. In a previous range-wide study, extremely low variation was detected at the mtDNA control region, a locus that is generally variable within populations. Despite low variation, it did reveal distinct population structure (Fig. 4). In order to extend this work, we are genotyping all specimens at seven variable microsatellite markers previously isolated by Li et al. (2007). These ‘higher resolution’ markers are being used to re-examine population structure among the previously collected sites plus four recent additions from Minnesota and Colorado. Specifically, we seek to: 1.Ascertain the most genetically diverse sites as targets for conservation. 2.Estimate gene flow among disjunct areas to better understand extant population dynamics. 3.Estimate recent and historical demography via Bayesian techniques. This will allow us to place recent observations in an appropriate historical context. This is very important when considering conservation measures. Introduction The addition of mtDNA control region sequences from Colorado and Minnesota revealed a single new haplotype that differs from a common Nebraska haplotype by only a single base pair. Topology of the previously published haplotype network changed very little and the estimated divergence time for the two predominant clades remains at approximately 0.6mya. Analysis of the F67 microsatellite locus revealed quality allelic diversity (k = 17 alleles) with no significant deviation from HW Equilibrium, so it is a quality marker to begin with. Estimates of allelic richness, which takes into account population size in assessing genetic diversity, revealed no appreciable differences between Nebraska sites; thus, no concrete recommendations for specific conservation targets have yet been made to the managing agency. As data is collected from the six remaining microsatellites, a stronger signal of disparity should be revealed. A more robust data set will also provide the analytical power necessary to disentangle the historical patterns and processes in these diminutive fishes. Results and Discussion Materials and Methods Acknowledgements Funding for this research has been provided by a State Wildlife Grant (T-34-R) from the Nebraska Game and Parks Commission. We also thank numerous contributors in the field, including Pat Ceas of St. Olaf College, Northfield, MN. Gerrick Meyer 1, Tom Shapaker 1, James Good 1, Joe Strande 1, Aimee Finley 1, Jason Macrander 2 Dr. Chenhong Li 2,3, and Dr. Michael Bessert 1,2 From , specimens were collected from ten sites in Nebraska and another ten in Missouri, representing a significant, but not comprehensive, portion of the known range. In , additional samples were acquired from disjunct areas in southwest Minnesota and Colorado (see Fig. 2 above). Whole specimens or anal fin clips were preserved in 95% EtOH. Full sequences of the mtDNA control region (966 base pairs) have been acquired from all specimens. All have been edited with Sequencher 3.0, aligned with Clustal X software, and analyzed for Figure 2. Haplotype Network. Size of circles indicates # of haplotypes. Each branch represents one mutation (from Li and Bessert 2009). H10 (yellow) is a recently discovered variant from Colorado. Figure 3b. Sample microsatellite score (from Bessert and Orti 2008). Figure 1. Fundulus sciadicus, the Plains Topminnow; male in spawning colors. phylogeographic relationships with TCS software. We are currently collecting microsatellite genotypic data from all specimens. Briefly, microsatellites are sections of DNA that include short repeated motifs (e.g., CACACACA or GATAGATAGATA). They usually occur in non-coding regions; therefore, they are not subject to functional constraints and are ‘free’ to mutate. Consequently, they tend to be the most highly variable loci in the eukaryotic genome and, as such, provide for the best possible resolution when dealing with questions of recent ancestry. A total of seven loci will be included in the study. To date, we have collected data from one of these loci, F67 (e.g., Fig. 3 below), from all Nebraska specimens (N=81), as these populations are in most urgent need of conservation. We measured total allelic diversity as well as allelic richness from this locus. All other loci will be co-amplified, ideally, in a single multiplex reaction. H10 Figure 2. Estimated distribution of Fundulus sciadicus; a. locality within U.S.; b. specific collection sites (green sites acquired at Stout) Figure 3. Example microsatellite chromatogram.; X – axis = fragment length (bp); Y-axis = peak intensity. Two loci are included in row 1 while row 2 indicates the relative position of internal size standard peaks.