CS 420 – Design of Algorithms MPI Data Types Basic Message Passing - sends/receives.

Slides:



Advertisements
Similar presentations
MPI Basics Introduction to Parallel Programming and Cluster Computing University of Washington/Idaho State University MPI Basics Charlie Peck Earlham College.
Advertisements

Chapter 3. MPI MPI = Message Passing Interface Specification of message passing libraries for developers and users –Not a library by itself, but specifies.
Reference: / MPI Program Structure.
MPI Message Passing Interface
MPI Fundamentals—A Quick Overview Shantanu Dutt ECE Dept., UIC.
Introduction to MPI. What is Message Passing Interface (MPI)?  Portable standard for communication  Processes can communicate through messages.  Each.
SOME BASIC MPI ROUTINES With formal datatypes specified.
Message-Passing Programming and MPI CS 524 – High-Performance Computing.
Distributed Memory Programming with MPI. What is MPI? Message Passing Interface (MPI) is an industry standard message passing system designed to be both.
S an D IEGO S UPERCOMPUTER C ENTER N ATIONAL P ARTNERSHIP FOR A DVANCED C OMPUTATIONAL I NFRASTRUCTURE Message Passing Interface (MPI) Part I NPACI Parallel.
MPI Point-to-Point Communication CS 524 – High-Performance Computing.
Using MPI - the Fundamentals University of North Carolina - Chapel Hill ITS - Research Computing Instructor: Mark Reed
Programming Using the Message Passing Paradigm Ananth Grama, Anshul Gupta, George Karypis, and Vipin Kumar To accompany the text ``Introduction to Parallel.
HPDC Spring MPI 11 CSCI-6964: High Performance Parallel & Distributed Computing (HPDC) AE 216, Mon/Thurs. 2 – 3:20 p.m Message Passing Interface.
1 Tuesday, October 10, 2006 To err is human, and to blame it on a computer is even more so. -Robert Orben.
Sahalu JunaiduICS 573: High Performance Computing6.1 Programming Using the Message Passing Paradigm Principles of Message-Passing Programming The Building.
CS 179: GPU Programming Lecture 20: Cross-system communication.
1 Copyright © 2010, Elsevier Inc. All rights Reserved Chapter 3 Distributed Memory Programming with MPI An Introduction to Parallel Programming Peter Pacheco.
Parallel Processing1 Parallel Processing (CS 676) Lecture 7: Message Passing using MPI * Jeremy R. Johnson *Parts of this lecture was derived from chapters.
CSC 7600 Lecture 7 : MPI1 Spring 2011 HIGH PERFORMANCE COMPUTING: MODELS, METHODS, & MEANS MESSAGE PASSING INTERFACE MPI (PART A) Prof. Thomas Sterling.
Director of Contra Costa College High Performance Computing Center
2.1 Message-Passing Computing ITCS 4/5145 Parallel Computing, UNC-Charlotte, B. Wilkinson, Jan 14, 2013.
Message Passing Interface Dr. Bo Yuan
Specialized Sending and Receiving David Monismith CS599 Based upon notes from Chapter 3 of the MPI 3.0 Standard
Parallel Computing A task is broken down into tasks, performed by separate workers or processes Processes interact by exchanging information What do we.
1 Review –6 Basic MPI Calls –Data Types –Wildcards –Using Status Probing Asynchronous Communication Collective Communications Advanced Topics –"V" operations.
Parallel Programming with MPI Prof. Sivarama Dandamudi School of Computer Science Carleton University.
1 What is MPI?  MPI = Message Passing Interface  Specification of message passing libraries for developers and users  Not a library by itself, but specifies.
Message Passing Programming with MPI Introduction to MPI Basic MPI functions Most of the MPI materials are obtained from William Gropp and Rusty Lusk’s.
1 MPI Primer Lesson 10 2 What is MPI MPI is the standard for multi- computer and cluster message passing introduced by the Message-Passing Interface.
CS 838: Pervasive Parallelism Introduction to MPI Copyright 2005 Mark D. Hill University of Wisconsin-Madison Slides are derived from an online tutorial.
Message Passing Programming Model AMANO, Hideharu Textbook pp. 140-147.
Summary of MPI commands Luis Basurto. Large scale systems Shared Memory systems – Memory is shared among processors Distributed memory systems – Each.
Message Passing Interface (MPI) 1 Amit Majumdar Scientific Computing Applications Group San Diego Supercomputer Center Tim Kaiser (now at Colorado School.
Distributed-Memory (Message-Passing) Paradigm FDI 2004 Track M Day 2 – Morning Session #1 C. J. Ribbens.
Parallel Programming with MPI By, Santosh K Jena..
MA471Fall 2002 Lecture5. More Point To Point Communications in MPI Note: so far we have covered –MPI_Init, MPI_Finalize –MPI_Comm_size, MPI_Comm_rank.
Oct. 23, 2002Parallel Processing1 Parallel Processing (CS 730) Lecture 6: Message Passing using MPI * Jeremy R. Johnson *Parts of this lecture was derived.
MPI Jakub Yaghob. Literature and references Books Gropp W., Lusk E., Skjellum A.: Using MPI: Portable Parallel Programming with the Message-Passing Interface,
PPC SPRING MPI 11 CSCI-4320/6340: Parllel Programming and Computing: West Hall, Tues, Friday 12-1:20 p.m. Message Passing Interface (MPI 1) Prof.
Message Passing and MPI Laxmikant Kale CS Message Passing Program consists of independent processes, –Each running in its own address space –Processors.
Introduction to MPI CDP 1. Shared Memory vs. Message Passing Shared Memory Implicit communication via memory operations (load/store/lock) Global address.
MPI Point to Point Communication CDP 1. Message Passing Definitions Application buffer Holds the data for send or receive Handled by the user System buffer.
An Introduction to MPI (message passing interface)
Message Passing Interface (MPI) 2 Amit Majumdar Scientific Computing Applications Group San Diego Supercomputer Center Tim Kaiser (now at Colorado School.
MPI Send/Receive Blocked/Unblocked Josh Alexander, University of Oklahoma Ivan Babic, Earlham College Andrew Fitz Gibbon, Shodor Education Foundation Inc.
Project18 Communication Design + Parallelization Camilo A Silva BIOinformatics Summer 2008.
Chapter 5. Nonblocking Communication MPI_Send, MPI_Recv are blocking operations Will not return until the arguments to the functions can be safely modified.
Grouping Data and Derived Types in MPI. Grouping Data Messages are expensive in terms of performance Grouping data can improve the performance of your.
Implementing Processes and Threads CS550 Operating Systems.
Lecture 5 CSS314 Parallel Computing Book: “An Introduction to Parallel Programming” by Peter Pacheco
1 ParallelAlgorithms Parallel Algorithms Dr. Stephen Tse Lesson 9.
MPI-Message Passing Interface. What is MPI?  MPI is a specification for the developers and users of message passing libraries. By itself, it is NOT a.
Lecture 3 Point-to-Point Communications Dr. Muhammad Hanif Durad Department of Computer and Information Sciences Pakistan Institute Engineering and Applied.
WEST VIRGINIA UNIVERSITY High Performance and Scientific Computing A BRIEF INTRODUCTION TO HIGH PERFORMANCE COMPUTING.
Distributed Processing with MPI International Summer School 2015 Tomsk Polytechnic University Assistant Professor Dr. Sergey Axyonov.
Introduction to MPI Programming Ganesh C.N.
Introduction to parallel computing concepts and technics
Auburn University COMP7330/7336 Advanced Parallel and Distributed Computing Message Passing Interface (cont.) Topologies.
MPI Point to Point Communication
Introduction to MPI.
Introduction to MPI CDP.
CS 584.
CS 5334/4390 Spring 2017 Rogelio Long
Lecture 14: Inter-process Communication
Hardware Environment VIA cluster - 8 nodes Blade Server – 5 nodes
NOTE: FOR CLASS USE MPICH Version of MPI!!
Hello, world in MPI #include <stdio.h> #include "mpi.h"
Hello, world in MPI #include <stdio.h> #include "mpi.h"
CS 584 Lecture 8 Assignment?.
Presentation transcript:

CS 420 – Design of Algorithms MPI Data Types Basic Message Passing - sends/receives

MPI Data Types MPI has a set of its own data type definitions Most MPI types correspond to C types – although some are unique to MPI C types may vary by implementation MPI types are consistent across implementations Supports portability in parallel applications

MPI types and C types MPI typesC types MPI_CHARsigned char MPI_SHORTsigned short int MPI_INTsigned int MPI_LONGsigned long int MPI_UNSIGNED_CHARunsigned char MPI_UNSIGNED_SHORTunsigned short int

MPI types and C types MPI typesC types MPI_UNSIGNEDunsigned int MPI_UNSIGNED_LONGunsigned long int MPI_FLOATfloat MPI_DOUBLEdouble MPI_LONG_DOUBLElong double

Other MPI Data Types MPI_BYTE MPI_PACKED May be others depending on the implementation

MPI send and receive MPI_Send and MPI_Recv are the most elemental forms of MPI data communications Provide the core set of functions MPI_Send and MPI_Recv are blocking communications Processing cannot proceed until the communication process is complete.

MPI_Send – send a message MPI_Send( void*message, intcount, MPI_Datatype datatype, intdest, inttag, MPI_Commcomm)

MPI_Send MPI_Send(a,1,MPI_FLOAT,myrank+1,11,MPI_COM M_WORLD) sends a single float to the next process in MPI_COMM_WORLD and attaches a tag of 11. MPI_Send(vect,100, MPI_FLOAT,5,12, MPI_COMM_WORLD); sends a vector of 100 floats to process 5 in MPI_COMM_WORLD and uses a tag of 12.

MPI_Recv int MPI_Recv( void* message, intcount, MPI_Datatypedatatype, intsource, inttag, MPI_Commcomm, MPI_Status*status)

MPI_Recv MPI_Recv(x, 1, MPI_FLOAT, lsource, 11, MPI_COMM_WORLD, status); picks up a message with a tag=11,from the source lsource in MPI_COMM_WORLD. The status of the transaction is stored in status. MPI_Recv(xarray, 100, MPI_FLOAT, xproc, 12, MPI_COMM_WORLD, status); picks up a message tagged 12 from the source xproc in MPI_COMM_WORLD. That status of the transaction is stored in status.

MPI_Recv - wildcards MPI_ANY_SOURCE lets MPI_Recv take a message from any source. Use as the source parameter MPI_ANY_TAG lets MPI_Recv take a message regardless of its tag.

Wildcards No wildcards for MPI_Send No wildcards for communicator Send must specify a tag Recv must specify a matching tag or use a wildcard

MPI_ANY_SOURCE To receive from any process MPI_Recv(x, 1, MPI_FLOAT, MPI_ANY_SOURCE, 11, MPI_COMM_WORLD, status); … and if you don’t care what the tag is- MPI_Recv(x, 1, MPI_FLOAT, lsource, MPI_ANY_TAG, MPI_COMM_WORLD,status);

MPI_Status Return variable for the results of the communication process. A structure Roughly struct MPI_STATUS { MPI_SOURCE source; MPI_TAG tag; MPI_ERROR errormsg; }

MPI_Status Note: no byte count in status variable (how many bytes received in the message) MPI_Get_count( MPI_Status* status, MPI_Datatype datatype, int* count_ptr);

MPI Basic Core Functions MPI_Init MPI_Comm_rank MPI_Comm_size MPI_Send MPI_Recv MPI_Finalize