Community Interactions: Feedback, Support and Curation Eva Huala The Arabidopsis Information Resource (TAIR)

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Presentation transcript:

Community Interactions: Feedback, Support and Curation Eva Huala The Arabidopsis Information Resource (TAIR)

TAIR Community 20 % Grad students 20% Postdocs 24% Professors Other researchers Teachers Students

Organism of Interest Job Title Who are they?

Usage Statistics 2.5 million files per month ~600,000 page views ~25,000 IP addresses asia com net uk eur unkn edu

History ( )

TAIR Community Interactions Community feedback Community data submission Community outreach

Community Feedback Sources to User comments on detail pages

Community Feedback by TAIR uses Jitterbug to track user s Each is assigned to a curator Questions and replies are archived Regular expression searching is possible Answers are compiled into a FAQ

Jitterbug at TAIR

Typical User s I want data I don’t understand this tool/data Please fix/improve this tool Please update this annotation I can’t find this info Login/registration questions

Community Feedback Sources to User comments on detail pages

TAIR Community Interactions Community feedback Community data submission Community outreach

Community Data Submission Gene Family Gene class symbol Person/Lab info Seed and DNA stock info (through ABRC) Microarray data Gene structure/function Marker data 2010 functional genomics projects

Data Submission Methods Web forms (gene class symbol, person/lab) Excel spreadsheets s User-defined formats (large datasets)

Gene Class Symbol Registration

Other Data Submission

Data Submission Page

Community Data Sources Large genomics projects Gene Family web pages Individual researchers –detail page comments – s –excel template data submission

TAIR Community Interactions Community feedback Community data submission Community outreach

Community Outreach Education and Outreach page Workshops

Education and Outreach Page

TAIR Workshops Arabidopsis meeting ASPB Plant Biology Plant and Animal Genome XII

TAIR Staff Sue Rhee Eva Huala Leonore Reiser Tanya Berardini Suparna Mundodi Peifen Zhang Nick Moseyko Margarita Garcia Brandon Zoeckler Danny Yoo Behzad Mahini Thomas Yan Iris Xu Dan Weems Mary Montoya Neil Miller Jessie Zhang Julie Tacklind