Professor Carole Goble

Slides:

Advertisements

Similar presentations

OMV Ontology Metadata Vocabulary April 10, 2008 Peter Haase.

Advertisements

Dr. Leo Obrst MITRE Information Semantics Information Discovery & Understanding Command & Control Center February 6, 2014February 6, 2014February 6, 2014.

CICC June meeting IUPUI team: Kelsey Forsythe Malika Mahoui Deepthi Jonnala Usha Cheemakurthi.

Presented to: By: Date: Federal Aviation Administration Registry/Repository in a SOA Environment SOA Brown Bag #5 SWIM Team March 9, 2011.

© Geodise Project, University of Southampton, Applying the Semantic Web to Manage Knowledge on the Grid Feng Tao, Colin.

David De Roure Social Networking and Workflows in Research.

© Geodise Project, University of Southampton, Semantic Web based Content Enrichment and Knowledge Reuse in e-Science.

BiodiversityCatalogue How-Tos Robert Haines. BiodiversityCatalogue Home Hover over the ‘s for more information!

Semantic Web Services Peter Bartalos. 2 Dr. Jorge Cardoso and Dr. Amit Sheth

European Life Sciences Infrastructure for Biological Information Rafael C Jimenez ELIXIR CTO EMBL-EBI workshop networks and pathways.

Designing, Executing and Reusing Scientific Workflows Katy Wolstencroft, Paul Fisher, myGrid.

Accelerating Time to Experiment – The myExperiment Approach to Open Science David De Roure Carole Goble Jiten Bhagat.

Bringing it all Together Sierra as Library Services Platform Today and Tomorrow Next Generation Library Services Platform Steven Nielsen Vice President-

Using the Semantic Web to Construct an Ontology- Based Repository for Software Patterns Scott Henninger Computer Science and Engineering University of.

Microsoft Research Faculty Summit David De Roure University of Southampton, UK.

Introduction to Web services MSc on Bioinformatics for Health Sciences May 2006 Arnaud Kerhornou Iván Párraga García INB.

Workflow discovery in e-science Antoon Goderis Peter Li Carole Goble University of Manchester, UK

Mining Semantic Descriptions of Bioinformatics Web Resources from the Literature Hammad Afzal, Robert Stevens, Goran Nenadic School of Computer Science.

Jiten Bhagat University of myExperiment A Social VRE for Research Objects JISC Roadshow | February.

Service Discovery in my Grid and the Biocatalogue, a Life Science Service Registry Katy Wolstencroft myGrid University of Manchester.

The my Grid project aims to provide middleware layers that make the Information Grid appropriate for the needs of bioinformatics. my Grid is building high.

OWL-S: Semantic Markup for Web Services

COHSE Informed WWW Link Navigation Using Ontologies Prof. Carole Goble, Sean Bechhofer Dr. Leslie Carr, Prof. Wendy Hall, Prof. David De Roure, Steve Harris,

Metadata in my Grid: Finding Services for in silico Science Dr Katy Wolstencroft myGrid University of Manchester.

OpenMDR: Generating Semantically Annotated Grid Services Rakesh Dhaval Shannon Hastings.

Špindlerův Mlýn, Czech Republic, SOFSEM Semantically-aided Data-aware Service Workflow Composition Ondrej Habala, Marek Paralič,

1/ 27 The Agriculture Ontology Service Initiative APAN Conference 20 July 2006 Singapore.

Enriching the Ontology for Biomedical Investigations (OBI) to Improve Its Suitability for Web Service Annotations Chaitanya Guttula, Alok Dhamanaskar,

Ontology Development and Usage for Protozoan Parasite Research John A. Miller and Alok Dhamanaskar Collaborators: Michael E. Cotterell, Chaitanya Guttula,

Taverna and my Grid Basic overview and Introduction Tom Oinn

Designing, Executing, Reusing and Sharing Workflows: Taverna and myExperiment Supporting the in silico Experiment Life Cycle Katy Wolstencroft Paul Fisher.

Development of Front End Tools for Semantic Grid Services Dr.S.Thamarai Selvi, Professor & Head, Dept. of Information Technology, Madras Institute of Technology,

Agent Model for Interaction with Semantic Web Services Ivo Mihailovic.

Taverna and my Grid Open Workflow for Life Sciences Tom Oinn

MyGrid: Personalised e-Biology on the Grid Professor Carole Goble Contact e-Science.

MyGrid: Personalised e-Biology on the Grid Professor Carole Goble Contact

Taverna Workflow. A suite of tools for bioinformatics Fully featured, extensible and scalable scientific workflow management system – Workbench, server,

© DATAMAT S.p.A. – Giuseppe Avellino, Stefano Beco, Barbara Cantalupo, Andrea Cavallini A Semantic Workflow Authoring Tool for Programming Grids.

Semantic Professor Carole Goble

A BioCatalogue Cataloguing Web Services for the Life Science Community Carole Goble, Khalid Belhajjame, Robert Stevens, Jiten Bhagat, Franck Tanoh, Katy.

Michael Witt Interdisciplinary Research Librarian & Assistant Professor Purdue Libraries & Distributed Data Curation Center (D2C2) Eliciting.

Taverna Workflows for Systems Biology Katy Wolstencroft School of Computer Science University of Manchester.

1 Dr. Paolo Missier, Prof. Carole Goble Information Management Group School of Computer Science, University of Manchester, UK with additional material.

1 Open Ontology Repository: Architecture and Interfaces Ken Baclawski Northeastern University 1.

EBI is an Outstation of the European Molecular Biology Laboratory. Promoting services with annotation and registries Hamish McWilliam, EMBL-EBI External.

©Ferenc Vajda 1 Semantic Grid Ferenc Vajda Computer and Automation Research Institute Hungarian Academy of Sciences.

Technology behind using Taverna in caGrid caGrid user meeting Stian Soiland-Reyes, myGrid University of Manchester, UK

Block 7: Reports Back to Plenary Group on CE and CI Working Group Activities Tasks and Activities -- October 22 DataONE Kick-off Meeting October 20-22,

1 Curation and Characterization of Web Services Jose Enrique Ruiz October 23 rd IVOA Fall Interop Meeting - Sao Paolo.

Scientific Workflow systems: Summary and Opportunities for SEEK and e-Science.

1 Ontolog OOR-BioPortal Comparative Analysis Todd Schneider 15 October 2009.

Using DAML+OIL Ontologies for Service Discovery in myGrid Chris Wroe, Robert Stevens, Carole Goble, Angus Roberts, Mark Greenwood

Service discovery with semantic alignment Alberto Fernández AT COST WG1 meeting, Cyprus, Dec, 2009.

MFI-7: Metamodel for Service Registration 1 Zaiwen Feng, Keqing He, Chong Wang, Jian Wang Peng Liang, Jianxiao Liu, Yangfan He SKLSE, Wuhan University,

1 Open Ontology Repository initiative - Planning Meeting - Thu Co-conveners: PeterYim, LeoObrst & MikeDean ref.:

A presentation about myExperiment David De Roure and Carole Goble.

Suggestions for Galaxy Workflow Design Using Semantically Annotated Services Alok Dhamanaskar, Michael E. Cotterell, Jessica C. Kissinger, and John Miller.

The 10 Best Practices for Workflow Design BioVeL M6 Workshop Göteborg, May 10-11, 2012 Kristina Hettne, Marco Roos (LUMC), Katy Wolstencroft, Carole Goble.

ISMB Demo, 01 July 2009 Franck Tanoh University of Manchester, UK.

Supporting Collaborative Ontology Development in Protégé International Semantic Web Conference 2008 Tania Tudorache, Natalya F. Noy, Mark A. Musen Stanford.

Taverna, myExperiment and HELIO services Anja Le Blanc Stian Soiland-Reyes Alan Willams University of Manchester.

MyExperiment Team F2F Manchester November Team Face to Face Meeting (Manchester) Thursday, 26th November myExperiment meeting. University.

A Semi-Automated Digital Preservation System based on Semantic Web Services Jane Hunter Sharmin Choudhury DSTC PTY LTD, Brisbane, Australia Slides by Ananta.

Aleksandra Pawlik University of Manchester. Something that can be put into a workflow Well described - what the component does Behaves “well” - conforms.

Aleksandra Pawlik Alan Williams University of Manchester.

The Influence and Impact of Web 2.0 on e-Research Infrastructure, Applications and Users User Day.

Professor Carole Goble University of Manchester, UK

The GEMBus Architecture and Core Components

Microsoft Azure Data Catalog

Presentation transcript:

Professor Carole Goble

Started June 08 Closed pilot Dec 08 Pilot release April 09 BioCatalogue-Friends focus group Perpetual beta Three year award

Influences

Curation Model Versioning Quantitative Content Tags Service Model Semantic Content Ontologies Functional Capabilities Provenance Operational Capabilities Operational Metrics Use Policy Social Standing Ratings Usage Statistics Attribution Service Profile Wheel Free text Searching Statistics Usable and Useful Understand able

WADL External Descriptions Service Profile Discovery WSDL WSDL2 A.N. Other SAWSDL SA-REST Analytics Sorting Browse/Shop Search Customised Services Workflows Monitoring Profiles Ranking Validating Parse Generate Parse Invoke Searches Comparing Applications REST API

SeekDa! BioMOBY Central DAS Registry Feed Migrate EMBRACE BioSapien myGrid Feed and Cross-link BioLinks Scrap myExperiment Code Base Content for Pilot CASIMIR

Discovery Decision Support Reuse (anonymous) Palpability Automated service composition and validation Decision Making Pain Gain Modelling Functional Capability [Lord et al 2004] Phase 1: text + tags Phase 2: + tags sourced from ontologies Phase 3: + full semantic annotation

Workflows and Services Experts Social by User Community refine validate refine validate Self by Service Providers seed refine validate seed Automated refine validate seed Content Capture and Curation

Grounding WSDL Informatics Bioinformatics Molecular Biology Formats Tasks Inputs Outputs Operations Domain Content Service features Task Method Resource Service myGrid Functional Capability Ontology W3C OWL and RDFS Number of classes ~750 myGrid and BioMOBY [Wroe 2003]

A toolkit to assist in the cost-effective creation and evolution of reliable semantic annotations Web services. Annotation verification and inference.

Users Services Discovery Curation Monitoring Integration registration registration test scripts registration dashboard scavenging tagging wsdl parsing seeded controlled vocab. text search sorting on criteria and categories ownership REST API Open Search myExperiment Identity management account management profile management Wsdl monitoring live tests SOAP services full version management instances 500 services 250 full curated specialist parsers. bookmarkingnotification QoS app feeds browse and drill down recommendations ratings recommendations. tag search usage-based Identity management Content Batch migration Provider engagement Policy identification Pilot REST services Taverna

BioCatalogue Team Thomas Laurent Hamish McWilliams Franck Tanoh Jiten Bhagat Carole Goble Rodrigo Lopez Eric Nzuobontane Steve Pettifer Katy Wolstencroft Robert Stevens David De Roure