cloud-based platform: application for genomic epidemiology studies Rodrigo Jardim & Alberto M. R. Dávila (Computational and Systems Biology.

Slides:



Advertisements
Similar presentations
Next-Generation Sequencing: Methodology and Application
Advertisements

What Is Genomics? Genomics is the study of how the entire genome of a species functions as a unit and evolves over time. It is the study of life’s blueprint,
The Golden Age of Biology DNA -> RNA -> Proteins -> Metabolites Genomics Technologies MECHANISMS OF LIFE Health Care Diagnostics Medicines Animal Products.
Original image: 512 pixels by 512 pixels. Probe is the size of 1 pixel. Picture is sampled at every pixel ( samples taken)
Zachary Bendiks. Jonathan Eisen  UC Davis Genome Center  Lab focus: “Our work focuses on genomic basis for the origin of novelty in microorganisms (how.
Bioinformatics Core Facility Ernesto Lowy February 2012.
Sage Bionetworks Mission Sage Bionetworks is a non-profit organization with a vision to create a “commons” where integrative bionetworks are evolved by.
H = -Σp i log 2 p i. SCOPI Each one of the many microbial communities has its own structure and ecosystem, depending on the body environment it exists.
Bioinformatics and medicine: Are we meeting the challenge?
IPlant Collaborative Tools and Services Workshop iPlant Collaborative Tools and Services Workshop Collaborating with iPlant.
Interoperability Showcase In collaboration with IHE Use Case 3 Care Theme: Leveraging National Healthcare Registries in Care Delivery Biosurveillance Monitoring.
The NIH Roadmap and the Human Microbiome Project Francis S. Collins, M.D., Ph.D. National Human Genome Research Institute April 22, 2007.
computer
The iPlant Collaborative Community Cyberinfrastructure for Life Science Tools and Services Workshop Objectives.
IPlant cyberifrastructure to support ecological modeling Presented at the Species Distribution Modeling Group at the American Museum of Natural History.
DAN LAWSON BRC 2011 – ANNUAL MEETING UT SOUTHWESTERN MEDICAL CENTER DALLAS, TX SEPTEMBER 2011 Challenges and opportunities of new sequencing technologies.
The iPlant Collaborative Community Cyberinfrastructure for Life Science Network for Integrating Bioinformatics into Life Sciences Education April, 2014.
Current Challenges in Metagenomics: an Overview Chandan Pal 17 th December, GoBiG Meeting.
Sackler Medical School
Molecular biology and evolution in genomics era Li Jun and Frederick C.C. Leung 5N01, School of Biological Science, The University.
Tsute (George) Chen Bioinformatics Core Department of Microbiology The Forsyth Institute March 24 th, 2015 HOMD A Tour to the Data and Tools.
IPlant Collaborative Tools and Services Workshop iPlant Collaborative Tools and Services Workshop Collaborating with iPlant.
The metagenomics sequencing service CD Genomics. Metagenomics: Metagenomics is the study of metagenomes, genetic material recovered directly from environmental.
Data Workflow Overview Genomics High- Throughput Facility Genome Analyzer IIx Institute for Genomics and Bioinformatics Computation Resources Storage Capacity.
IPlant Genomics in Education
Metagenomics at Second Genome
| nectar.org.au NECTAR TRAINING Module 2 Virtual Laboratories and eResearch Tools.
__________________________________________________________________________________________________ Fall 2015GCBA 815 __________________________________________________________________________________________________.
UCSC Genome Browser Zeevik Melamed & Dror Hollander Gil Ast Lab Sackler Medical School.
Flight Simulator Overview Flight Compartment Host Computer Motion Control Cabinet Motion Platform 13/6/2016 Visual Display Visual Image Generator Interface.
QUICK VIEW: Founded in 2012 by a group of MIT scientists Built by world class engineers from Google, Twitter, and Palantir, so your data is safe Always.
MGvizCE: Clinical Exome QC and Analytics Pablo Marin-Garcia, Daniel Perez-Gil, Cristian Perez-Garcia, Alba Sanchis-Juan,Azahara Fuentes, Jose M. Juanes,
Transforming Science Through Data-driven Discovery Genomics in Education University of Delaware – February 2016 Jason Williams, Education, Outreach, Training.
tracking microbes at the strain level
Image from
Bioinformatics Computation in the Cloud A Joint Collaboration Between Microsoft’s External Research and eXtreme Computing Groups
Transforming Science Through Data-driven Discovery Workshop Overview Ohio State University MCIC Jason Williams – Lead, CyVerse – Education, Outreach, Training.
Boundless Lecture Slides Free to share, print, make copies and changes. Get yours at Available on the Boundless Teaching Platform.
CyVerse Tools and Services
Tools and Services Workshop
Joslynn Lee – Data Science Educator
Presented By: Chinua Umoja
Evaluation of NCI Research Resources
Metafast High-throughput tool for metagenome comparison
Data-Drive Analytics for Precision Medicine
Invest. Ophthalmol. Vis. Sci ;57(10): doi: /iovs Figure Legend:
October 2017.
JMC CGEMS SUMMER GENOMICS TRAINING WORKSHOPS
KOOPrime - Business Process Integrator for Life Sciences
LEARN WHY COMPUTERS ARE REVOLUTIONIZING BIOLOGY!
USF Health Informatics Institute (HII)
HII Technical Infrastructure
Scientists use several techniques to manipulate DNA.
A B Tumour 74 – Whole Genome Tumour 74 – Whole Genome C D
Physics-based simulation for visual computing applications
H = -Σpi log2 pi.
Cyberinfrastructure for the Life Sciences
Video Platforms: Services and Clinical Use
Iris Authentication: System
HPC for large NGS data: Microbial diversity analysis
C.2.10 Sample Questions.
Lab # 5 Detecting and reading barcodes
C.2.8 Sample Questions.
A typical current computational meta'omic pipeline to analyze and contrast microbial communities. A typical current computational meta'omic pipeline to.
C.2.8 Sample Questions.
Alignment and CNV analysis in cattle
The future TB clinic. The future TB clinic. Sputum, saliva, and fecal samples are collected from patients for genome sequencing, SNP typing, or metagenomic.
Challenges
General overview of the bioinformatic pipelines for the 16S rRNA gene microbial profiling and shotgun metagenomics. General overview of the bioinformatic.
Presentation transcript:

cloud-based platform: application for genomic epidemiology studies Rodrigo Jardim & Alberto M. R. Dávila (Computational and Systems Biology Lab, IOC, Fiocruz)

Stingray (original) workflow Genome visualization tool Cloud platform: OpenNebula, Debian image

“Human + Microbial DNA” Clinical Sample 1 Clinical Sample 2 Clinical Sample 3 Clinical Sample 4 Clinical Sample 5 Clinical Sample 6 Clinical Sample 7 Clinical Sample 8 … Genomic epidemiology for improved surveillance studies Potential new strains/variants detection Improved health system DNA Extraction DNA Extraction Human DNA Removal Human DNA Removal Metagenomic sequecing Metagenomic sequecing 600 Gb or 1 Tb 600 Gb or 1 Tb (

Feedback: Privacy Policy Feedback
Do Not Sell My Personal Information
About project: SlidePlayer Terms of Service

© 2024 SlidePlayer.com. Inc. All rights reserved.