Tsute (George) Chen Bioinformatics Core Department of Microbiology The Forsyth Institute March 24 th, 2015 HOMD A Tour to the Data and Tools.

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Presentation transcript:

Tsute (George) Chen Bioinformatics Core Department of Microbiology The Forsyth Institute March 24 th, 2015 HOMD A Tour to the Data and Tools

Google: HOMD human oral microbiome database ftp://ftp.homd.org

Taxonomy Identify and study organisms ….. Genomics Biological functions …..

707 taxa/species Defined at 98.5% 16S rRNA sequence similarity 381 (54%) with at least one genomic sequence

Streptococcus

The HOMD 16S rRNA Reference Sequences Current Version: 13.2 Total No. of Sequences: 831 Searchable on the HOMD web site Downloadable from HOMD web site Total No. ofin HOMDIn RefSeq Domain21 Phylum1613 Class3023 Order4739 Family9082 Genus Species707686

Jbrowse Genome Viewer at HOMD Upload your own genome annotation Your own NGS sequencing data, e.g. RNAseq, ChIP, small RNA, etc Any microbial genomes

Future Plan Continue taxonomy curation More 16S rRNA reference sequences More genomes More software tools and analysis pipelines Improve back-end computational power Cloud platform for analysizing NGS sequences

Acknowledgement