A B M145  mbl::aac  mbl C24  mbl C24 M C24  mbl::aac M145  mbl-2  mbl1 M red sco2450 mbl sco2450 aac frt B........ 5014 bp......... B B...........5657.

Slides:



Advertisements
Similar presentations
What if we want to know what allele(s) of beta-globin an individual has?
Advertisements

Restriction mapping revision
Kristin Rosche, Emily Thornsen & Lloyd Turtinen  Department of Biology  University of Wisconsin-Eau Claire Knockout of the US29 gene of Human Cytomegalovirus.
How do you identify and clone a gene of interest? Shotgun approach? Is there a better way?
Suppl. figure 1 Zale et al. 215E 223D 211E218E230E 36E 209F 23E 208F 236E212E213E 203D 210E 221D 207E WRI OLE DGA GAPDH 5E 100D 6B 25B 32D 206E205E 21E.
Molecular Basis for Relationship between Genotype and Phenotype DNA RNA protein genotype function organism phenotype DNA sequence amino acid sequence transcription.
Lecture 3 – Selection of Recombinants & clone analysis The white colonies will all be recombinants, but only one of these many colonies will contain the.
C H-NS (nM) 14 nM FIS28 nM FIS56 nM FISno FIS Figure S1. FIS and H-NS can simultaneously interact with cspA promoter.
2470 bp 1891 bp WT bp 2314 bp A B Fig. S1. Verification with PCR amplification of the.
Volume 11, Issue 11, Pages (November 2004)
Restriction Enzymes and Plasmid Mapping
Biotech Tools Review
Vav‐1 gene‐targeting strategy.
Relationship between Genotype and Phenotype
Volume 117, Issue 3, Pages (September 1999)
Consequences of T‐DNA insertion on SWP expression in swp mutant.
ADAMTS-5 deficient mice do not develop mechanical allodynia associated with osteoarthritis following medial meniscal destabilization  A.M. Malfait, J.
by Jean-Michel Cayuela, Betty Gardie, and François Sigaux
Levels of Polyadenylation Factor CstF-64 Control IgM Heavy Chain mRNA Accumulation and Other Events Associated with B Cell Differentiation  Yoshio Takagaki,
Volume 117, Issue 3, Pages (September 1999)
Rationale for generation of reporter fusions by Red-mediated recombination. Rationale for generation of reporter fusions by Red-mediated recombination.
Brca1 Controls Homology-Directed DNA Repair
Volume 9, Issue 4, Pages (April 2002)
Volume 2, Issue 4, Pages (October 1998)
Silencing in Yeast rDNA Chromatin
Volume 7, Issue 4, Pages (October 1997)
Volume 154, Issue 6, Pages (September 2013)
Glycopeptide Biosynthesis in Amycolatopsis mediterranei DSM5908
Generation of γ1 EQ conditional knock-in mice.
Complex Polymorphisms in an ∼330 kDa Protein Are Linked to Chloroquine-Resistant P. falciparum in Southeast Asia and Africa  Xin-zhuan Su, Laura A. Kirkman,
Glycopeptide Biosynthesis in Amycolatopsis mediterranei DSM5908
Volume 14, Issue 8, Pages (August 2007)
BRCA2 Is Required for Homology-Directed Repair of Chromosomal Breaks
Interplay between Nonsense-Mediated mRNA Decay and DNA Damage Response Pathways Reveals that Stn1 and Ten1 Are the Key CST Telomere-Cap Components  Eva-Maria.
FLS2 Molecular Cell Volume 5, Issue 6, Pages (June 2000)
Distal Sequences, but Not ori-β/OBR-1, Are Essential for Initiation of DNA Replication in the Chinese Hamster DHFR Origin  R.F Kalejta, X Li, L.D Mesner,
Volume 39, Issue 1, Pages (July 2010)
Volume 8, Issue 4, Pages (October 2003)
Volume 4, Issue 4, Pages (April 1996)
Volume 2, Issue 1, Pages (January 2014)
Rif1 and Rif2 Inhibit Localization of Tel1 to DNA Ends
A Prematurely Expressed Igκ Transgene, but Not a VκJκ Gene Segment Targeted into the Igκ Locus, Can Rescue B Cell Development in λ5-Deficient Mice  Roberta.
Volume 11, Issue 11, Pages (November 2004)
Volume 2, Issue 4, Pages (October 1998)
Targeted disruption of the Nijmegen breakage syndrome gene NBS1 leads to early embryonic lethality in mice  Jie Zhu, Simone Petersen, Lino Tessarollo,
Markerless Mutations in the Myxothiazol Biosynthetic Gene Cluster
Volume 10, Issue 12, Pages (December 2003)
Volume 7, Issue 1, Pages (January 2003)
APOE Gene Targeting (A) Schematic representation of the endogenous APOE locus, the gene targeting vector and the targeted APOE locus. The exons of the.
Material for Quiz 5 from Chapter 8
Clonal Conditional Mutagenesis in Malaria Parasites
Multiple Developmental Stage–Specific Enhancers Regulate CD8 Expression in Developing Thymocytes and in Thymus-Independent T Cells  Wilfried Ellmeier,
Volume 10, Issue 4, Pages (April 1999)
Targeted Stimulation of Meiotic Recombination
Abridged Genetic Engineering Pathway (Original “A” Sequence)
Volume 10, Issue 4, Pages (April 2003)
Volume 22, Issue 4, Pages (April 2014)
Targeting strategy and molecular verification of myoglobin disruption.
Establishment of monoclonal SMN2-GFP reporter line in HEK293.
Establishment of a TgGAMA conditional-knockdown strain.
BAC recombineering, gene targeting and RMCE strategies.
The Meiosis-Specific Hop2 Protein of S
Fig. 4. Targeted disruption of STK35 transcripts in mouse.
Volume 8, Issue 12, Pages (December 2001)
Fig. 1. Generation of WNK3 knockout mice
CozE homologs do not dramatically affect cell division in L. plantarum
Volume 7, Issue 1, Pages (January 2003)
Increased Recombination Intermediates and Homologous Integration Hot Spots at DNA Replication Origins  Mónica Segurado, Marı́a Gómez, Francisco Antequera 
A Functional Enhancer Suppresses Silencing of a Transgene and Prevents Its Localization Close to Centromeric Heterochromatin  Claire Francastel, Mark.
Xiaorong Wang, Peter Baumann  Molecular Cell 
Presentation transcript:

A B M145  mbl::aac  mbl C24  mbl C24 M C24  mbl::aac M145  mbl-2  mbl1 M red sco2450 mbl sco2450 aac frt B bp B B bp B B bp..... B sco2450 Fig. S1. Inactivation strategy of mbl. A, Schematic drawing. mbl was deleted by PCR targeting of cosmid C24 (Redenbach et al., 1996) in a two step process, first replacing mbl by an aac cassette and subsequently deleting aac by FRT recombination, leaving a 81 bp scar sequence (hatched bar) in the chromosome. B, Mutant genotype was confirmed by Southern blotting of BamHI digested chromosomal DNA. DNA fragments used as probes are drawn as a grey line in A. M, Dig VII Molecular weight Standard, Roche (81, 359, 492, 710, 718, 992, 1164, 1482, 1515, 1882, 1953, 2799, 3639, 4899, 6106, 7427, and 8576 bp) 2452

E Bg H Fig. S2. Inactivation of sco6166. A) Schematic drawing of the knock out plasmid, carrying upstream and downstream regions. Relevant restriction sites are indicated. E: EcoRI, Bg: BglII, H: HindIII. B) Schematic maps of the wildtype and the  sco6166 mutant. A grey bar indicates the probe used in Southern blotting (C). The sizes of the hybridysing fragments are given. Relevant BamHI sites (B) are indicated. C) Southern blot of BamHI digested total DNA of M145 and the  sco6166 mutant. M, DigVII Standard, Roche. B Bg bp... B B B bp B B recA 6167 aphII pKO sco6167 sco6167 M145  sco6166 M M145  sco6166 A B C

 mreB  mbl  mreB/mbl M145  sco6166 Fig. S3. Sporulation defect of S. coelicolor mutants defective in mreB homologues on MS agar % sucrose. Approximately 10 5 or 10 4 spores of M145,  mreB,  mbl,  mreB/mbl and  sco6166 were spotted on MS agar containing 10.3 % sucrose and incubated for 5 days at 30°C before taking the photograph. Whereas the wildtype M145 and the  sco6166 mutant were able to sporulate,  mreB,  mbl, and  mreB/mbl were affected in sporulation

M145  mbl Fig. S4. Transmission electron micrographs of M145 and the  mbl mutant. Thin sections of spores of S. coelicolor M145 (A) and its mbl gene replacement mutant (B) were analysed at high resolution by transmission electron microscopy. Integrity of the  mbl spore walls is compromised, resulting in aberrant spores with a diffuse wall. Since the  mbl spores are more sensitive than the wildtype spores, we can not exclude that the appearance of the spore surface was affected by the fixation/staining process. Bar = 500 nm.

Fig. S5. Disperse fluorescence of SCO6166-mCherry in the substrate mycelium of S. coelicolor M145. A non-replicative plasmid carrying the sco6166-mcherry fusion gene was integrated into the chomosomal sco6166 gene of M145 via homologous recombination. Culture was grown on LB agar for two days. Bar, 4 µm. phase contrast SCO6166-mCherry

Fig. S3  mbl  pbp2 phase contrast MreB-eGFP Fig. S6. Localization of MreB-eGFP to the spore periphery in mutants  mbl and  pbp2. Cultures were grown on MS agar for three days. Bar, 4 µm. MreB-eGFP localization underneath the spore membrane is not affected by the absence of Mbl or PBP2.

Fig. S7. Transcriptional analysis of the mbl-mcherry fusion gene in the  mreB deletion mutant. Cultures were grown on cellophane discs on MS agar at 30°C and harvested after 48 h or 72 h. The amounts of transcripts were compared by PCR. Expression of mbl-mcherry was detectable in the  mreB mutant in considerable amounts. Transcription of the housekeeping hrdB gene and transcription of mbl in M145 (48 h) were used as controls. hrdB mbl  mreB ::pAH5 72h M145::pAH5 48 h H2OH2O M145::pAH5 72h  mreB ::pAH5 48h M h