Loschmidt Laboratories Enantis, Ltd. PROTEIN ENGINEERING.

Slides:



Advertisements
Similar presentations
Opportunities and Challenges in Biotechnology Development in Mongolia B. Dashnyam.
Advertisements

Research, innovation and education (practice in South Moravia Region) Jan Slovák Centre for Technology Transfer, Masaryk University.
Thermus aquaticus DNA Polymerase Adam O’Leary October 21, 2014.
Course Code Course Title Credits BMS 500 Responsible Conduct of Research 1 BMS 510F Biochemistry and Cell Biology 10 BMS 512 Critical Thinking 1 BMS 523A.
Bioscience/Biomedical Research at Idaho State University Christopher Daniels, Ph.D. Director, ISU Biomedical Research Institute and Professor of Pharmaceutical.
Masaryk University Enantis, s.r.o. VOP-026 Šternberk, s.p., division VTÚO Brno CPN, s.r.o. E N Z Y M A T I C D E C O N T A M I N A T I O N O F S U L F.
Structural Genomics – an example of transdisciplinary research at Stanford Goal of structural and functional genomics is to determine and analyze all possible.
Protein databases Morten Nielsen. Background- Nucleotide databases GenBank, National Center for Biotechnology Information.
Introduction to Genomics, Bioinformatics & Proteomics Brian Rybarczyk, PhD PMABS Department of Biology University of North Carolina Chapel Hill.
Molecular Evolution with an emphasis on substitution rates Gavin JD Smith State Key Laboratory of Emerging Infectious Diseases & Department of Microbiology.
Protein Activity Unmasked
Gel Electrophoresis.
Algorithms in Computational Biology Tanya Berger-Wolf Compbio.cs.uic.edu/~tanya/teaching/CompBio January 13, 2006.
Thermus aquaticus DNA Polymerase Adam O’Leary October 21, 2014
Protein Sequence Analysis - Overview Raja Mazumder Senior Protein Scientist, PIR Assistant Professor, Department of Biochemistry and Molecular Biology.
Virus Structure Tutorial Shuchismita Dutta, Ph.D. RCSB PDB, 2008.
From T. MADHAVAN, & K.Chandrasekaran Lecturers in Zoology.. EXIT.
Mr. Lam Man Yee Hong Kong Baptist University Affiliated School Wong Kam Fai Secondary and Primary School Mr. Lam Man Yee.
Mr. Lam Man Yee Hong Kong Baptist University Affiliated School Wong Kam Fai Secondary and Primary School Mr. Lam Man Yee.
Bioinformatics.
Towards new biocatalytic activity of ATIM by structure based directed evolution Projects, Bottlenecks and Where to Go Next?
What is Biotechnology?.
Practical session 2b Introduction to 3D Modelling and threading 9:30am-10:00am 3D modeling and threading 10:00am-10:30am Analysis of mutations in MYH6.
Biotechnology Thermal “Needs” Paul Nesvadba EVITHERM meeting at PTB Berlin, 17 th May 2004.
Bioinformatics for Biofuel Cell Development Parker Evans.
T.Jadczyk, Bioinformatics Applications in the Virtual Laboratory Bioinformatics Applications in the Virtual Laboratory Tomasz Jadczyk AGH University of.
What are the problems? Lower yield potential of varieties
Ben-Gurion University Research focus on riboswitches Bioinformatics Research Focus: Searching for Novel Riboswitches in Newly Sequenced Genomes Danny Barash†
EBI is an Outstation of the European Molecular Biology Laboratory. Annotation Procedures for Structural Data Deposited in the PDBe at EBI.
The Science of Biology: the Study of Life fau.edu/biology.
Technology Day on RDI Operational Programme Research and Development for Innovation (OP R&DI) October 19, 2009.
PerkinElmer Life Sciences Production Company Meeting - 1st February 2002 Progenesis John Hoyland Product Manager - Bioinformatics.
How Does Antiretroviral Therapy Affect HIV Mutation and Vice Versa? Arlin Toro Devin Iimoto Devin Iimoto.
Structure database: PDB Tuomas Hätinen. Protein Data Bank A repository for 3-D biological macromolecular structure. It includes proteins, nucleic acids.
Protein Sequence Analysis - Overview - NIH Proteomics Workshop 2007 Raja Mazumder Scientific Coordinator, PIR Research Assistant Professor, Department.
Food Science What is the study of Food Science? Ask your neighbor… what is the study of Food Science…?
Python for Biofuel Cell Development Parker Evans.
A collaborative tool for sequence annotation. Contact:
Department of Biotechnology
Bioinformatics Project BB201 Metabolism A.Nasser
CST Prep: A. DNA, RNA, & Proteins Protein Differences.
Eric S. Huseby et al, Cell (2005); Nature Immunol. (2007), compared the T cells of normal mice, with mice genetically engineered to present only one type.
Interdisciplinary Research Interests.
Training Plan Seoul National University College of Medicine Dr LEE Jong-Wook Fellowship Program Sonexai KIDOIKHAMMMOUAN Medical Biochemistry.
PROTEIN INTERACTION NETWORK – INFERENCE TOOL DIVYA RAO CANDIDATE FOR MASTER OF SCIENCE IN BIOINFORMATICS ADVISOR: Dr. FILIPPO MENCZER CAPSTONE PROJECT.
Bio-technology.  Proving bread with leaven prehistoric  Alcoholic drinks from fermented juices prehistoric  Vinegar from fermented juices prehistoric.
Information retrieval and sliding window programs April 5, 2011 Hand in Homework #1. Homework #2 due Tuesday, April 12. Learning objectives- Understand.
OBJECTIVE 11 NOTES. Explain the evolutionary significance of a nearly universal genetic code.
Graduate Research with Bioinformatics Research Mentors Nancy Warter-Perez, ECE Robert Vellanoweth Chem and Biochem Fellow Sean Caonguyen 8/20/08.
Investigations of HIV-1 Env Evolution Evolutionary Bioinformatics Education: A BioQUEST Curriculum Consortium Approach Grand Valley State University August.
Figure 14-1 Molecular Biology of the Cell (© Garland Science 2008)
Biocatalysis, Dr. Rebecca Buller
Biological Databases By: Komal Arora.
Kostelecky et al. 2006, Journal of Bacteriology The Crystal Structure of the Zinc Phosphodiesterase from Escherichia coli Provides Insight into Function.
Bioinformatics Madina Bazarova. What is Bioinformatics? Bioinformatics is marriage between biology and computer. It is the use of computers for the acquisition,
Hood College Master of Science in Bioinformatics (Proposed)
Display of Near Optimal Sequence Alignments
Molecular Techniques and Biotechnology
Reminders Unit 7 Exam- Friday, February, 24th
Enrichment of sequence disorder in the cytosolic phosphoproteome.
Medical Physics / Clinical Engineering
Introduction to Bioinformatic
Desulfovibrio salexigens flavodoxin protein Uniprot ID DESAD:FLAV
Figure 3 Rett syndrome severity and age at diagnosis by mutation type
Engine Part ID Part 1.
Engine Part ID Part 2.
Engine Part ID Part 2.
Biology.
Table 2. Modal parameters estimated by Pulse Reflex®
SUBMITTED BY: DEEPTI SHARMA BIOLOGICAL DATABASE AND SEQUENCE ANALYSIS.
Presentation transcript:

Loschmidt Laboratories Enantis, Ltd. PROTEIN ENGINEERING

LOSCHMIDT LABORATORIES & ENANTIS  17 years experience in protein science  multi-disciplinary team

LOSCHMIDT LABORATORIES & ENANTIS  17 years experience in protein science  multi-disciplinary team  laboratories and facilities (1.5 mil EUR) University Campus and Biotechnology Incubator, Brno

LOSCHMIDT LABORATORIES & ENANTIS  17 years experience in protein science  multi-disciplinary team  laboratories and facilities (1.5 mil EUR) University Campus and Biotechnology Incubator, Brno  molecular biology and microbiology

LOSCHMIDT LABORATORIES & ENANTIS  17 years experience in protein science  multi-disciplinary team  laboratories and facilities (1.5 mil EUR) University Campus and Biotechnology Incubator, Brno  molecular biology and microbiology  bioinformatics and molecular modelling

 17 years experience in protein science  multi-disciplinary team  laboratories and facilities (1.5 mil EUR) University Campus and Biotechnology Incubator, Brno  molecular biology and microbiology  bioinformatics and molecular modelling  biochemistry and biophysics LOSCHMIDT LABORATORIES & ENANTIS

BIOSENSING DECONTAMINATION BIOCATALYSIS

DEVELOPMENT OF BIOCATALYTIC PROCESS

 GENETIC DATABASES  EXTREMOPHILES DEVELOPMENT OF BIOCATALYTIC PROCESS

 DIRECTED EVOLUTION resistance to organic solvents DEVELOPMENT OF BIOCATALYTIC PROCESS

 DIRECTED EVOLUTION  RATIONAL DESIGN thermostability enhancement DEVELOPMENT OF BIOCATALYTIC PROCESS

 DIRECTED EVOLUTION  RATIONAL DESIGN thermostability enhancement DEVELOPMENT OF BIOCATALYTIC PROCESS

 DIRECTED EVOLUTION  RATIONAL DESIGN thermostability enhancement 20°C DEVELOPMENT OF BIOCATALYTIC PROCESS

 OPTIMIZED EXPRESSION  FERMENTATION  DOWN STREAM DEVELOPMENT OF BIOCATALYTIC PROCESS

 MEDIUM ENGINEERING  IMMOBILISATION DEVELOPMENT OF BIOCATALYTIC PROCESS

HOTSPOT WIZARD Hot Spot Wizard RCSB PDB user

Hot Spot Wizard RCSB PDB CSA UniProt user PDBSWS HOTSPOT WIZARD

Hot Spot Wizard RCSB PDB CSA UniProt user CAVER CASTp PDBSWS HOTSPOT WIZARD

Hot Spot Wizard RCSB PDB CSA UniProt user CAVER CASTp PDBSWS tunnels Cd-hit BLASTNRDB MUSCLE Rate4Site HOTSPOT WIZARD

low high mutability HOTSPOT WIZARD

1,3-1,4-  -glucanase PDB-ID 1GBG haloalkane dehalogenase PDB-ID 1BN6 phosphotriesterase PDB-ID 1I0D  -lactamase PDB-ID 1BLS HOTSPOT WIZARD

Estimated mutability hot spots region Proportion of mutations HOTSPOT WIZARD positive and neutral

Estimated mutability hot spots region Proportion of mutations HOTSPOT WIZARD positive and neutral slightly negative

positive and neutral slightly negative deleterious Estimated mutability hot spots region Proportion of mutations HOTSPOT WIZARD

Pavelka et al. Nucl. Acids Res. 37: W