One genome is not enough

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Presentation transcript:

One genome is not enough Gil McVean The Oxford Big Data Institute

The Gene X hypothesis

N = 1

Do 40% of males have mental retardation?

What constitutes evidence? Class B – Functional relevance Class A – Statistical association Transmission within pedigree Association within population

Precision comes from numbers: Multiple sclerosis at 50,000

The value of large numbers: Ischaemic heart disease and systolic blood pressure 120 140 160 180 1 2 4 8 16 32 64 128 256 Age at risk: 80-89 70-79 60-69 50-59 40-49 5000 people 120 140 160 180 1 2 4 8 16 32 64 128 256 Age at risk: 80-89 70-79 60-69 50-59 40-49 50 000 people 120 140 160 180 1 2 4 8 16 32 64 128 256 Age at risk: 80-89 70-79 60-69 50-59 40-49 500 000 people Hazard Ratio (95% CI) Usual SBP (mmHg) Usual SBP (mmHg) Usual SBP (mmHg) Courtesy of Prospective Studies Collaboration, unpublished

Medical data is big and growing… Imaging Genome sequence Electronic medical records High dimensional profiling Mobile health

…at a population scale 500,000 100,000 100,000 500,000 1,000,000

Challenges of data sharing Volume How do we cope with the computational and analytical scale? Heterogeneity How do we ensure we are measuring the same thing? Privacy Do we have to share individual level data to achieve power? Security How can we ensure that data are used appropriately? Engagement How do we get people excited about sharing their data?

An international partnership is needed

Challenges of data sharing Volume How do we cope with the computational and analytical scale? Heterogeneity How do we ensure we are measuring the same thing? Privacy Do we have to share individual level data to achieve power? Security How can we ensure that data are used appropriately? Engagement How do we get people excited about sharing their data?

N = 1 | N > 100,000