Aim #1 Engage community Highlight existing: modeling efforts strategic datasets Aim #2 Define and bootstrap an inclusive community-driven model and data-integration.

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Presentation transcript:

Aim #1 Engage community Highlight existing: modeling efforts strategic datasets Aim #2 Define and bootstrap an inclusive community-driven model and data-integration process Open pre-competitive reference models of hippocampus CA1 Documented, validated, and alive

Community Models

Old argument We can’t collaborate because we don’t have the tools!

Microcircuit – Somatosensory Cortex Submitted & in review: Markram et. al., “Reconstruction and simulation of neocortical microcircuitry”; Collaborative science: 73 authors. Sparse Data Principles Algorithms Multi-level validation “Massively Collaborative Modeling”

Why now? HBP roadmap to deliver models of neocortex, hippocampus, cerebellum of similar detail to BBP cortical column model (April 2016) CA1 Model by Sept 2015 (Armando will show how it will look without community contribution) HBP mandate for open, collaborative tools Be inclusive, non-competitive with work of community of experts Avoid yet another model Models by community for community

Points of contention Time-scale of community initiative Community approach to follow 1.Don’t (business as usual) 2.Adhoc (ModelDB, etc.) 3.Coordinated push (OpenWorm is example?) Level of detail – Data-driven in silico Neuroscience – Abstract models

Level of detail - False Dichotomy Integrate new data in level of data – Data-driven is data-ready Necessary but not sufficient: – Automated & principled & repeatable & quantifiable simplification – … of data-driven reference

HBP Period 1 Review (Oct 2013 – Sep 2014)Slide 11 Macro-scale (whole brain) Meso-scale (regions & areas) Microcircuit (unitary network) Cellular Fibers Vasculature Cells Multiple scales of data integration Sub-cellular Optimization

Agenda Sessions by domains/levels, bottom-up – Neurons & Synapses – Microcircuit – Large-scale datasets Discussion/Crowd-source – State-of-the-art data, models – Summary of minimal validations for comment & review – Transparent (live) note taking Community convergence (30mins) – Position statements (2 slides, 5 mins max)

My Ideal Outcomes Consensus on a community approach to follow Take first steps to realization Opinion paper: – 1/3 discussion of issues, approaches, motivation – 1/3 summary parameterization & validation datasets, modeling state-of-art – 1/3 implementation, roadmap, dissemination strategy Trigger other similar initiatives … What are yours?

Community Models A beginning …