Why Biomedical Literature? Potentially 80% of the known biomedical knowledge is contained in PubMed Analysis Interpretation.

Slides:



Advertisements
Similar presentations
Relate text to background knowledge to enhance comprehension and retain key ideas.
Advertisements

News and Blog Analysis with Lydia Steven Skiena Dept. of Computer Science SUNY Stony Brook
PubMed.
Deep Indexing: Harnessing the Power of Data Discovery Mark Hyer VP, Secondary Publishing.
Knowledge Enabled Information and Services Science Schema-Driven Relationship Extraction from Unstructured Text Cartic Ramakrishnan Kno.e.sis Center, Wright.
1 Schema-Driven Relationship Extraction from Unstructured Text Cartic Ramakrishnan, Krys Kochut and Amit Sheth LSDIS Lab, University of Georgia, Athens,
Using MeSH: Medical Subject Headings Before searching, use the MeSH database to identify search terms.
Prof. Carolina Ruiz Computer Science Department Bioinformatics and Computational Biology Program WPI WELCOME TO BCB4003/CS4803 BCB503/CS583 BIOLOGICAL.
Writing an original research paper Part one: Important considerations
NATIONAL LIBRARY OF MEDICINE The PubMed ID and Entrez, PubMed and PubMed Central Edwin Sequeira National Center for Biotechnology Information June 21,
1 Interfaces for Intense Information Analysis Marti Hearst UC Berkeley This research funded by ARDA.
Text Mining Tools: Instruments for Scientific Discovery Marti Hearst UC Berkeley SIMS Advanced Technologies Seminar June 15, 2000.
An Overview of Text Mining Rebecca Hwa 4/25/2002 References M. Hearst, “Untangling Text Data Mining,” in the Proceedings of the 37 th Annual Meeting of.
Topics - Reading a Research Article Brief Overview: Purpose and Process of Empirical Research Standard Format of Research Articles Evaluating/Critiquing.
Scientific Literature, PubMed, & UA Library Lesson Date: 08/25/04 – W Created by: Angela M. Amoia 08/19/04.
B IOMEDICAL T EXT M INING AND ITS A PPLICATION IN C ANCER R ESEARCH Henry Ikediego
TEXT MINING IN BIOMEDICAL RESEARCH QI LI 03/28/14.
Chong Ho Yu Department of Psychology, APU 362: Research Method.
Knowledge Integration for Gene Target Selection Graciela Gonzalez, PhD Juan C. Uribe Contact:
Srihari-CSE730-Spring 2003 CSE 730 Information Retrieval of Biomedical Text and Data Inroduction.
Elements of the scientific article Professor Magne Nylenna, M.D., PhD
Mastering the master narrative: Three plus One Three: The old consensus picks among survey texts come down to nearly fifty places as illustrations for.
PSYC 433. Literature Search What is a lit search? Why do we do them? – Knowledge Get a general idea of what is out there in our area of interests, what.
The Evolving Digital Mathematics Library: A Mathematics Librarian’s Perspective Timothy W. Cole University of Illinois at Urbana-Champaign 8 Dec
Text Mining Tools: Instruments for Scientific Discovery Marti Hearst UC Berkeley SIMS IMA Text Mining Workshop April 17, 2000.
New instruments for virtual CoP work Human Development Community of Practice Meeting Bratislava, 21 May 2008.
Double Entry Journals Four types of double entry journals used for analyzing text while reading literature.
Opportunities for Text Mining in Bioinformatics (CS591-CXZ Text Data Mining Seminar) Dec. 8, 2004 ChengXiang Zhai Department of Computer Science University.
SEPTEMBER 12, 2014 WARM UP Take article and score sheet from table. Read A-2 (Score sheet will be used after the reading.)
Aiding Biomedical Researchers with Tools to Assist Discovery Neil R. Smalheiser May 18, 2006.
Teaching literature: what  What sort of literature is suitable for use with learners?  The criteria of suitability depend on group of students, their.
Connecting computer into wifi network Eduroam Instructions (in Czech): 3. Scientific literature, Internet.
Central Idea and Objective Summary. Central “Main” Idea and Detail Main Idea- the topic and controlling point of a paragraph; what the paragraph is about.
Quantitative research design Guide
Analysis of Biomedical and Health Technology Trend
RaJoLink: Creative Knowledge Discovery by Literature Outlier Detection
Lindsay & Gordon’s Discovery Support Systems Model
Field-based Inquiry Dr. Lo Tin Yau Joe 12/9/2009.
An Instructional Framework
Livia Vasas PhD Budapest, September 2011.
Central Idea and Objective Summary
What is your FICO IQ Quiz? Link to article attached.
Literature Walk Fiction Retell / Recount Pre K Kindergarten
Quantitative research design Guide
MDN MDN. (a) Construction of the MDN. (Upper) A local region of the glycolysis, where the catalytic enzymes are shown with red background and their corresponding.
The Big 6 Reading Strategies
Title Methodology and Analysis Discussion Introduction Background
PubMed Review.
Introducing the subject (theme) that we are going to read about.
Interfaces for Intense Information Analysis
Research Inquiry Submitted by: Donna Lee Ettel, Ph.D.
10:00.
What is Literature? Why do we study it?
Learning-to-write argumentative texts about literature
3. Scientific literature, Internet online resources
Суури мэдлэг Basic Knowledge

Reader Response Literary Theory/Lens
Disillusion, Defiance, and Discontent
I can identify literary devices and explain their functions within the text.
You need: A pencil, eraser, highlighter and your ELA duo-tang
Title Introduction Methodology and Analysis Discussion Background
2.) How are each of these illustrations related to one another?
<PI’s Name & Institution>
3. Scientific literature, Internet online resources
How do we know what we know about the past?
Reading Strategies.
Tips for Creating and Delivering an Effective Presentation
English Literature Exam
Presentation transcript:

Why Biomedical Literature? Potentially 80% of the known biomedical knowledge is contained in PubMed Analysis Interpretation

“If we were to read but two biomedical articles daily, within 1 year we would fall more than 60 centuries behind…”

Read Consolidate Absorb / Act Understand Find Material Let Text Mining Do the Legwork for You

An Illustration

Mining Hidden Linkages Background Migraine-Magnesium Deficiency connection hypothesized (Swanson, 1988) Gallai et.al. corroborate this connection (1992) Task - Can we mine the hidden linkage? Dataset: All pre-1988 literature containing 1) Migraine (but NOT Magnesium), plus 2) Magnesium (but NOT Migraine)

The Human Way.. Dataset contains 15,000+ literature (3000+ for Migraine and for Magnesium) Browsing through them will take….. you can imagine!

With BioText

BioText Results