Genetic algorithms and solid-state NMR pulse sequences Matthias Bechmann *, John Clark $, Angelika Sebald & * Department of Organic Chemistry, Johannes.

Slides:



Advertisements
Similar presentations
What is Biophysics? Short answer: Application of physics methods to biological systems. To get a better perspective, we consider a very brief history of.
Advertisements

Forensic Identification by Craniofacial Superimposition using Soft Computing Oscar Ibáñez, Oscar Cordón, Sergio Damas, Jose Santamaría THE 7th ANNUAL (2010)
Nuclear Magnetic Resonance (NMR) Aims: To understand the details of how NMR works. To interpret some simple NMR spectra. Magnetic Nuclear Resonance In.
Advanced Higher Unit 3 Nuclear Magnetic Resonance Spectroscopy.
Protein NMR Spectroscopy: Principal and Practice Chapter 3.4 and 3.5: Pulse Techniques and Spin Decoupling Mar 19, 2009.
One-dimensional Spectra Provides 1. Chemical shifts & Relative Intensities 2. J-couplings.
Nuclear Magnetic Resonance (NMR) Spectroscopy
NMR: Theory and Equivalence. Nuclear Magnetic Resonance Powerful analysis – Identity – Purity No authentic needed Analyze nuclei – 1 H, 13 C, 31 P, etc.
NMR SPECTROSCOPY.
7- Double Resonance 1. Types of double resonance experiments 2. 1 H-{ 1 H} Homonuclear Decoupling C-{ 1 H} Heteronuclear Decoupling.
Lecture 7. Nuclear Magnetic Resonance (NMR). NMR is a tool that enables the user to make quantitative and structural analyses on compounds in solution.
Structure Determination by NMR CHY 431 Biological Chemistry Karl D. Bishop, Ph.D. Lecture 1 - Introduction to NMR Lecture 2 - 2D NMR, resonance assignments.
Rinat Ofer Supervisor: Amit Keren. Outline Motivation. Magnetic resonance for spin 3/2 nuclei. The YBCO compound. Three experimental methods and their.
A short presentation in the group by Prem Basnet 09/29/04.
Dynamic Effects in NMR. The timescale in nmr is fairly long; processes occurring at frequencies of the order of chemical shift differences will tend to.
Applying Multi-Criteria Optimisation to Develop Cognitive Models Peter Lane University of Hertfordshire Fernand Gobet Brunel University.
Optically Pumping Nuclear Magnetic Spin M.R.Ross, D.Morris, P.H. Bucksbaum, T. Chupp Physics Department, University of Michigan J. Taylor, N. Gershenfeld.
1 Nuclear Magnetic Resonance Spectroscopy Renee Y. Becker Valencia Community College CHM 2011C.
Carbon-13 Nuclear Magnetic Resonance
NMR Theory and C-13 NMR. Nuclear Magnetic Resonance Powerful analysis – Identity – Purity No authentic needed Analyze nuclei – 1 H, 13 C, 31 P, etc –
The spectrum The properties of solid-state spectra are more sample-dependent than solution-state ones. Questions on what is possible to say about a sample.
Drs. Wei Tian & Yanhui Chen Sep-Dec Main Content Introduction of Nuclear Magnetic Resonance (NMR) Analysis One Dimensional NMRs 1 H NMR 13 C NMR.
Nuclear Magnetic Resonance Spectroscopy. NMR Spectroscopy Method for determining the structure of organic molecules interpretation sample preparation.
Physical Chemistry 2 nd Edition Thomas Engel, Philip Reid Chapter 28 Nuclear Magnetic Resonance Spectroscopy.
Physical and Chemical Tests 10-1 Purification: Chromatography Distillation Recrystallization Comparison to known compounds: Melting point Boiling point.
Automated Alphabet Reduction Method with Evolutionary Algorithms for Protein Structure Prediction Jaume Bacardit, Michael Stout, Jonathan D. Hirst, Kumara.
GYROSCOPIC BEHAVIOR OF TOROIDAL FRACTAL PROTONS IN NMR prof. Ing. Pavel Ošmera, CSc. Brno University of Technology MUDr. Pavel Ošmera.
Nuclear Magnetic Resonance
Multiobjective Genetic Algorithms for Multiscaling Excited-State Direct Dynamics in Photochemistry Kumara Sastry 1, D.D. Johnson 2, A. L. Thompson 3, D.
4. The Nuclear Magnetic Resonance Interactions 4a. The Chemical Shift interaction The most important interaction for the utilization of NMR in chemistry.
Nuclear Magnetic Resonance Spectroscopy (NMR) Dr AKM Shafiqul Islam School of Bioprocess Engineering.
Different methods for structure elucidation. Spectroscopy: Studying the properties of matter through its interaction with different frequency components.
NMR spectroscopy in solids: A comparison to NMR spectroscopy in liquids Mojca Rangus Mentor: Prof. Dr. Janez Seliger Comentor: Dr. Gregor Mali.
Nuclear Magnetic Resonance ANIMATED ILLUSTRATIONS MS Powerpoint Presentation Files Uses Animation Schemes as available in MS XP or MS 2003 versions A class.
Department of Chemical Engineering Project IV Lecture 3: Literature Review.
Biomolecular Nuclear Magnetic Resonance Spectroscopy BASIC CONCEPTS OF NMR How does NMR work? Resonance assignment Structure determination 01/24/05 NMR.
1 Formal Verification of Candidate Solutions for Evolutionary Circuit Design (Entry 04) Zdeněk Vašíček and Lukáš Sekanina Faculty of Information Technology.
CHEM 344 Spectroscopy of Organic Compounds Lecture 1 4th and 5 th September 2007.
NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY Basics of …….. NMR phenomenonNMR phenomenon Chemical shiftChemical shift Spin-spin splittingSpin-spin splitting.
W HAT IS NUCLEAR MAGNETIC RESONANCE ? State that NMR spectroscopy involves interaction of materials with low-energy radio frequency radiation. Describe.
FT NMR WORKSHOP/===/ S.A.I.F./===/ NEHU/==/ Shillong INTRODUCTORY LECTURE S.ARAVAMUDHAN Distinct Spectroscopic context.
1 Nuclear Magnetic Resonance Nuclear Magnetic Resonance (NMR) Applying Atomic Structure Knowledge to Chemical Analysis.
There are 2 variables in NMR: an applied magnetic field B 0, and the frequency ( ) of radiation required for resonance, measured in MHz. NMR Theory
From physics we know that a spinning charge has an associated magnetic field. All nuclei have positive charge. Some nuclei have “spin” and are “NMR active”.
LITERATURE SEARCH ASSIGNMENT A) Properties of diatomic molecules A diatomic molecule is a molecule composed of two atoms. For homonuclear diatomics the.
Spectroscopy Chemistry 3.2: Demonstrate understanding of spectroscopic data in chemistry (AS 91388)
9 th Annual "Humies" Awards 2012 — Philadelphia, Pennsylvania Uday Kamath, Amarda Shehu,Kenneth A De Jong Department of Computer Science George Mason University.
Magnetic Resonance Imaging Glenn Pierce, King’s College London, Department of Physics Introduction Edward Purcell and Felix Bloch were both awarded the.
Leacock, Warrican & Rose (2009) Reviewing Literature Presentation 4.
Nuclear magnetic resonance study of organic metals Russell W. Giannetta, University of Illinois at Urbana-Champaign, DMR Our lab uses nuclear magnetic.
Spectroscopy 3: Magnetic Resonance CHAPTER 15. Conventional nuclear magnetic resonance Energies of nuclei in magnetic fields Typical NMR spectrometer.
There are 2 variables in NMR: an applied magnetic field B 0, and the frequency ( ) of radiation required for resonance. NMR Theory.
MOLECULAR STRUCTURE ANALYSIS NMR Spectroscopy VCE Chemistry Unit 3: Chemical Pathways Area of Study 2 – Organic Chemistry.
Abstract Specific applications of cognitive and constructivist theories in problem-based learning (PBL) include connecting prior knowledge and skills with.
Cont. Proteomics Structural Genomics Describes the experimental and analytical techniques that are used to determine the structure of proteins and RNA.
NMR Theory From physics we know that a spinning charge has an associated magnetic field. All nuclei have positive charge. Some nuclei have “spin” and are.
(Instrument part) Thanundon Kongnok M
On Routine Evolution of Complex Cellular Automata
NMR: Theory and Equivalence
CSc4730/6730 Scientific Visualization
Theory of NMR In a magnetic field, there are now two energy states for a proton: a lower energy state with the nucleus aligned in the same direction as.
LI: To understand the purposes of spectroscopy.
FT NMR WORKSHOP/===/ S.A.I.F./===/ NEHU/==/ Shillong
Nuclear Magnetic Resonance (NMR)
Nuclear Magnetic Resonance Spectroscopy
Nuclear Magnetic Resonance (NMR) Spectroscopy
Schematic diagram of NMR set-up
Nuclear Magnetic Resonance (NMR)
CHY 431 Biological Chemistry
Advanced Pharmaceutical Analysis
Presentation transcript:

Genetic algorithms and solid-state NMR pulse sequences Matthias Bechmann *, John Clark $, Angelika Sebald & * Department of Organic Chemistry, Johannes Kepler University Linz, Altenbergerstr. 69, A-4040 Linz, Austria $ Department of Chemistry, University of York, Heslington, YO10 5DD York, UK &Department of Computer Science, University of York, Deramore Lane, YO10 5GH York, UK

2 NMR: Nuclear magnetic resonance Spin interactions encode structural information: distance, electronic environment,... B0B0 B0B0 Nuclear magnetic resonance refers to phenomenon where nuclei in a magnetic field can absorb electromagnetic radiation (radio frequency typically) and re-emit it. Happens at specific resonance frequencies the profiles of which reveal compositional and structural information about molecules under examination for example.

3 NMR applications and challenges simple experiment - complex resultcomplex experiment - simple result ● all structural information encoded ● information in intensities and shape ● complex spin dynamic ● analysis difficult ● only selective structural information encoded ● information only in intensity ● simple effective spin dynamic ● analysis easy ● but loss of overall signal intensity Objective: Control spectral information content + high overall intensity only distance encoded

4 Manipulate spin dynamics by rotations ● magic angle sample spinning ● radio frequency pulses rf field spatial rotation spin rotations

5 Genetic algorithms and solid-state NMR (A)... would qualify today as a patentable new invention. Non-rotorsynchronous multipulse experiments have not been tried in solid-state NMR and the specific effects of non-rotorsynchronicity have not been exploited and researched so far. NMR sequences have been patented before. rotor rf field... time... rotor period rf period Perturbation theory only efficient for synchronous perturbation search space restricted...

6 Genetic algorithms and solid-state NMR (B) The result is equal to or better than a result that was accepted as a new scientific result at the time when it was published in a peer-reviewed scientific journal. Our new experiments carry traits of formerly published and highly influential experiments (POST-C7 and C7) which were developed using perturbation theory. However, our experiment offers much improved experimental performance. These papers have over 600 citations between them. GA best theoretical optimum perturbation theory Experimental efficiency [%]

7 Genetic algorithms and solid-state NMR [(C) The result is equal to or better than a result that was placed into a database or archive of results maintained by an internationally recognized panel of scientific experts. There is is no single database. The databases are usually specific to a class of compound and its spin systems like proteins, polymeres, etc. In biomolecular chemistry large databases exist, but these contain mostly data from liquid-state NMR. Solid-state NMR is predominately published in scientific literature but some (short) lists exist:

8 Genetic algorithms and solid-state NMR (D) The result is publishable in its own right as a new scientific result independent of the fact that the result was mechanically created. The work is published in a leading NMR journal (Journal of Magnetic Resonance). Our results greatly enhance the operational range of solid-state NMR experiments and provide pointers for the future development of new theoretical methods. The results are of clear interest to the NMR community Experimental efficiency [%] distance information dominating electronic influence dominating experimental efficiency spin system dependent GA best theoretical optimum perturbation theory

Genetic algorithms and solid-state NMR (E) The result is equal to or better than the most recent human-created solution to a long-standing problem for which there has been a succession of increasingly better human-created solutions. The suppression of chemical shielding anisotropy has not been better in any other experiment under these experimental conditions. We are dealing here with difficult cases. There exist many perturbation theory derived experiments aiming at the same goal as we. E.g. paper by Levitt (table 5 and table 7) gives a selection of experiments doing the same as we want but fail for the same reasons C7/PostC7 does. We improve on their work. Symmetry-Based Pulse Sequences in Magic-Angle Spinning Solid-State NMR. Levitt 2002.

10 Genetic algorithms and solid-state NMR (F) The result is equal to or better than a result that was considered an achievement in its field at the time it was first discovered. The seminal papers POST-C7 [3] and C7 [4] were immensely influential on the development and success of solid-state NMR over the past two decades. These papers are very widely cited in the field. Our work is a significant extension. Efficient diploar recoupling in the NMR of rotating solids. A sevenfold symmetric radiofreqiuency pulse sequence. Lee et al cites. Broadband diploiar recoupling in the nuclear magnetic resonance of rotating solids: A compensated C7 pulse sequence. Howey et al. (1998). 277 cites.

11 Genetic algorithms and solid-state NMR (G) The result solves a problem of indisputable difficulty in its field. Measuring inter-nuclear distances without chemical shielding interference is a long standing issue in solid-state NMR. Our initial results only partially solve the problem because NMR experiments typically require multiple performance criteria to be met at once; …. however, we can readily extend our research for multi-objective criteria Most likely, the concept of non-synchronicity can be applied to all types of NMR experiments, opening a completely new school of thought how NMR experiments should best be conducted.

12 Why we should get a prize It’s a foray into heavyweight science! Results of interest to a large and crucial scientific community and published in major NMR journal: Motivated by NMR theory and takes NMR into a new space. Performs well against several Humie criteria. And readily extendible to multiple criteria and also to other NMR experiments: excellent potential for further influence on science via a raft of evo-techniques.