Introduction to Compgenomics Andy Conley January 9, 2012

2 Introduction to Compgenomics  Collaboration -Wiki -Server -Final online product  Wiki -Documentation -Notes -Lectures -Anything else class-related  Server -Logging In -Programming  Genome Browser -Final deliverable

3 Very quick overview of the class  This is the fifth year that this course is being offered. -See: compgenomics.biology.gatech.edu and  I have been involved with the class all three semesters.  In the end you will produce something like this.

4 The Server  We have this nice big Linux server that we have just for the class.  compgenomics.biology.gatech.edu  Everybody has an account on it.  You guys need to log in.  You guys need to know how to use the server.

5 Compgenomics is our server Compgenomics SSH (secureCRT) Class wiki compgenomics2012.biology.gatech.edu Genome Browser Command line commands Website; view/edit documentation; useful for collaboration. For publishing our data online for biologists to see

6 The Class Wiki  There is a Wiki for the class at: compgenomics2012.biology.gatech.edu compgenomics2012.biology.gatech.edu  The Wiki shows the people and the groups there in.  For each group there is a page for a protocol.  We’ll use the Wiki to post presentations and information.

7 Wiki Accounts  Right now, the Wiki is open.  We want to close it.  Everybody needs to create an account on the Wiki.  Change your picture on the Wiki.

8 Logging in to the Server SecureCRT or PuTTY or Cygwin Terminal