MzGroupAnalyzer tutorial last updated: February 2014.

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Presentation transcript:

mzGroupAnalyzer tutorial last updated: February 2014

1.Select the desired m/z range in full scan for a combined full-scan spectrum (whole chromatogram might be too data-heavy – divide in more work steps in this case) Choose full scan in chromatogram window „Pin“ spectrum window below and select TIC range with left mouse hold down full scan combined full scan spectrum

2. Set parameters for your data in „spectrum list“ view In spectrum window: right click  view  spectrum list In „View“ header  open „Info bar“  „Elemental composition“ Parameters might depend on sample type, acquisition method, etc. Tick and untick „Elemental composition“ to refresh parameter settings Parameter settings (red windows in next slide) e.g.: elements C,H,O,N,S Intensity % 5 ppm, 1-2 or lower for high res instruments 5 formulae …

Important: Set „All peaks“ in „Display Options“ (right click in spectrum list)!! Set ppm limit according to the accuracy of your machine

3. Export from Xcalibur to Excel „Copy cell“ in Xcalibur „Edit“ header (seems to be best option RAM-storage- wise) alternatively „Export to Clipboard (Exact mass)“

4. Prepare Excel sheet for mzGroupAnalyzer Separate the elemental composition by using „text to columns“ and „space“ as separator. You have to keep the „composition“ column, so copy/paste it into the next column and then separate it

Finally, find the results in your specified saving folder.