26-28 th April 2004BioXHIT Kick-off Meeting1 Task 4.7.1: Automation in Computation Peter Briggs, CCP4.

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Presentation transcript:

26-28 th April 2004BioXHIT Kick-off Meeting1 Task 4.7.1: Automation in Computation Peter Briggs, CCP4

26-28 th April 2004BioXHIT Kick-off Meeting2 Context: CCP4 Developments towards Automation Core library developments Provision of “unified environment for general automation and rapid development of new applications” CCP4 Automation Project Starting soon

26-28 th April 2004BioXHIT Kick-off Meeting3 GUI CCP4 project database External Applications Run Scripts Libraries Resource Manager Expert System Database Handler Applications External databases (LIMS, facility) and applications Application BIOXHIT 4 th Dec 2002

26-28 th April 2004BioXHIT Kick-off Meeting4 Recently CCP4 have been engaged in re-implementing the core software libraries: Low-level functions (file handling, symmetry etc) Aims: Implement better description of the underlying data models Provide support for C/C++/scripting languages Maintain support for existing programs The next stage is provision of a “PX software toolbox”

26-28 th April 2004BioXHIT Kick-off Meeting5 PX toolbox: Aims Identify useful “medium-level” functionality: e.g. sorting/merging of reflection data, FFT generation within existing “computational units” (i.e. programs) currently missing from the suite Abstract these functions into a library (“toolbox”) can be exploited directly from within programs/scripts Provide interfaces to the functions for a number of programming/scripting languages

26-28 th April 2004BioXHIT Kick-off Meeting6 PX toolbox: outcomes Rapid development e.g. via scripting (Phenix model) Fill a (perceived) gap below the level of complexity of systems like Clipper Feed into BIOXHIT structure solution software pipelines CCP4 Software Automation Project other projects?

26-28 th April 2004BioXHIT Kick-off Meeting7 Within context of BIOXHIT: Early stages (within first 12 months): Liaise with BIOXHIT Partners to determine requirements and specification for toolbox functionality, choice of programming languages etc (Some overlap with WP5.1?) Report on evaluation/identification of functions (deliverable 4.7.1) will inform development of toolbox Later stages: Transfer developments to BIOXHIT Partners