ComGen – The Community College Genomics Research Initiative CCLI Grant (0717470) and TUES type II (1225857 )

Slides:



Advertisements
Similar presentations
Extending Civic Engagement Across the College Curriculum Presenter: Robert Kulisheck Professor – Department of Political Science Northern Michigan University.
Advertisements

Making the Case for Vision and Change Science Case Network ASMCUE 2013 Denver, CO.
PULSE: Partnership for Undergraduate Life Sciences Education Facilitating Students Success in the Classroom Through Course Transformation.
Integrating Mathematical Concepts Across the Biology Curriculum— Remediation Efforts, Introductory Biology Sequence, Biostatistics, and Bioinformatics.
A STEP to Grow in Science-Engineering-Mathematics Undergraduate Degrees Kandethody Ramachandran a (PI), Catherine Bénéteau a, Scott Campbell b, Gordon.
Jianlin Cheng, PhD Informatics Institute, Computer Science Department University of Missouri, Columbia Fall, 2011.
OEB 192 – Evolution of pathogens (Grenfell et al., 2004)
Educational Outreach in the Vision lab. What is “educational outreach”? Educational outreach......supports formal or classroom-based education...supports.
Welcome to Chem 434 Bioinformatics March 25, 2008 Review of course prerequisites Review of syllabus Review of Bioinformatics Course website Course objectives.
NASA and NC State University: Building Stronger Partnerships April 24, 2002 Dr. Charles Moreland, Vice Chancellor for Research and Graduate Studies, North.
BI420 – Course information Web site: Instructor: Gabor Marth Teaching.
We are developing a web database for plant comparative genomics, named Phytome, that, when complete, will integrate organismal phylogenies, genetic maps.
STAT115 STAT215 BIO512 BIST298 Introduction to Computational Biology and Bioinformatics Spring 2015 Xiaole Shirley Liu Please Fill Out Student Sign In.
Liberal Arts: Natural Science (Biology) Option Ruth Young.
A Summary of Recommendations From the National Conference C. Brewer, U MT, 2/2010.
5. How to Amass Evidence (Evaluation) of Change and its Effects? How does assessment drive transformative change in the classroom, at the department level,
The University of Arkansas GK-12 KIDS (K-12, I, Do, Science) Program Changing Graduate Training to Include a Responsibility for K-12 Science and Math Education.
Cpt S 471/571: Computational Genomics Spring 2015, 3 cr. Where: Sloan 9 When: M WF 11:10-12:00 Instructor weekly office hour for Spring 2015: Tuesdays.
Genome-scale Metabolic Reconstruction and Modeling of Microbial Life Aaron Best, Biology Matthew DeJongh, Computer Science Nathan Tintle, Mathematics Hope.
Srebrenka Robic Introducing Bioinformatics to Agnes Scott College.
Who Am I? OSU/COS/BB Alum Educator Advisor HHMI UGR Director OSU UGR Director Writer/Editor.
Course development and SFCC Curriculum Committee approval Fall Spokane Community College (SCC) Curriculum Committee approval Winter Biology.
El Campo High School.  What is it?  How is the data used?  How can this information help me in my classroom?  What ratings did ECHS receive?
OSU -22 yrs Barb Taylor Biopic BS CU PhD UCSD Res Asst CU & UCHSC Post-doc UW.
Yersinia Palindromic Sequences Introduction to Bioinformatics 301 April 30th, 2015 Jordan Davis.
Advancing Science with DNA Sequence Undergraduate Genomics in a Research University Environment A Collaborative Effort between the JGI and UC Merced M.
The iPlant Collaborative Community Cyberinfrastructure for Life Science Network for Integrating Bioinformatics into Life Sciences Education April, 2014.
Genomics (BIO 426) James Madison University. Why are you here? Have you taught Genomics before? Plan to teach it soon? Might you teach it sometime? Just.
Bioinformatics Education at North Central College Caroline St.Clair Professor of Computer Science.
Expanding Biomedical Research in Maine Mount Desert Island Biological Laboratory Patricia H. Hand, Ph.D. Administrative Director.
General Biology (Bio142) Lecture & Lab. Obtaining exam copies of recommended books. Requesting successful lab materials from peers. Weekly meetings to.
IPlant Collaborative Tools and Services Workshop iPlant Collaborative Tools and Services Workshop Building and Using Workflows Within the DE; Phylogenetics.
Follow-up Report on the University Center Rochester Presented to the Rochester Higher Education Development Committee September 8, 2005 Louellen N. Essex,
Page 1 Center for Biological Sequence Analysis The Technical University of Denmark DTU Comparison of sequenced Bacterial Genomes Comparative Microbial.
Bioinformatics & GCAT-SEEK Vince Buonaccorsi Juniata College Goal: Facilitate massively parallel sequencing projects involving faculty teaching undergrads.
Answering Vision and Change's Call to Action Facilitating Departmental Transformation toward Vision & Change Sharon Gusky, Northwestern CT Community College.
Evolution of BINF Bioinformatics Certificate Foothill College R. Cormia, L. English, K. Erickson.
FIRST II: A Model for Facilitating Change Diane Ebert-May 1 Jan Hodder 2 Debra Linton 3 1 Department of Plant Biology, Michigan State University 2 Oregon.
Project P.O.S.T. Preparing Outstanding Science Teachers A Partnership of GCS & UNCG A Partnership of GCS & UNCG.
Introductory Course Reform at Oregon State: promoting sustainable reform Dedra Demaree, Oregon State University Sissi Li, Oregon State University And the.
Capital Community College. INSTITUTION: Capital Community College NAMES of Team members: Janet Frost, Bharat Bhushan, and Carmen Yiamouyiannis VISION.
Research Problem In one sentence, describe the problem that is the focus of your classroom research project about student learning: There is a growing.
Genome sequencing and annotation Comprehensive identification of virulence gene candidates by various means Bioinformatic prioritization of virulence gene.
Connecting Bio-Link with Vision and Change Summer Fellows Forum 2010 Elaine Johnson, Director.
The HHMI Science Education Alliance Create Refine Network Disseminate Resources for Science Education Tuajuanda Jordan, Ph.D. Senior Program Officer Howard.
On the Cutting Edge A Professional Development Program for Current and Future Geoscience Faculty Heather Macdonald Cathy Manduca Dave Mogk Barb Tewksbury.
Interdisciplinary Research Interests.
Partnership for Undergraduate Life Science Education (PULSE) Transforming Undergraduate Life Science Education Sharon B. Gusky, Northwestern Connecticut.
PULSE: Partnership for Undergraduate Life Sciences Education.
Student Engagement with CUREs, SUREs, and Collaboration OK-INBRE Retreat Promoting Undergraduate Research in Oklahoma Virginia Balke, Ph.D. Delaware Technical.
Transforming Science Through Data-driven Discovery Genomics in Education University of Delaware – February 2016 Jason Williams, Education, Outreach, Training.
Graduate Research with Bioinformatics Research Mentors Nancy Warter-Perez, ECE Robert Vellanoweth Chem and Biochem Fellow Sean Caonguyen 8/20/08.
Gaurav Arora 1, Vinayak Mathur 2, and Anne Rosenwald 2 1 Gallaudet University, Department of Science, Technology, and Mathematics, Washington, DC
Innovation in T&L: moving the needle?
Bioinformatics for Research
JMC CGEMS SUMMER GENOMICS TRAINING WORKSHOPS
SEA-PHAGES Bioinformatics Workshop Overview
LEARN WHY COMPUTERS ARE REVOLUTIONIZING BIOLOGY!
Institution Name.
Robert Britton - Instructor Debora Rodrigues - TA
Overview Bioinformatics: Analyzing biological data using statistics, math modeling, and computer science BLAST = Basic Local Alignment Search Tool Input.
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
Office of Faculty Development - Programming Across Career Lifespan
Clonal strains of Pseudomonas aeruginosa were identified from independent patient-pairs using multilocus sequence typing (MLST). Clonal strains of Pseudomonas.
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
KEY CONCEPT Entire genomes are sequenced, studied, and compared.
Science is fun. Science is fun. Science is fun. Science is fun. Science is fun. Science is fun. Science is fun. Science is fun. Science is fun. Science.
Developing Student Learning Objectives and Metrics for Program Review
Presentation transcript:

ComGen – The Community College Genomics Research Initiative CCLI Grant ( ) and TUES type II ( )

ComGen model One quarter graduate school experience. Classroom based but….. Student - Hands on Instructor - Hand off “I never thought frustration could be fun.”

Real research experience – Early on! Prerequisite: General Biology Week1: How to use a micropippettor Week 9/10: I have analyzed five genomic clones!

Regular Lectures Regular Labs Regular Lectures Biology Majors/Microbiology Research Project + + Increased student engagement

Courses using bioinformatics Biology majors Stand alone Genomic research course Independent Study – fungal phylogeny, phage genomes Bioinformatics course Other research courses Microbiology Sanger sequencing Next-Gen sequencing

Research Projects Bacterial genome Fungal Phylogeny Phage genomes Insect genome? Other faculty interest projects BLAST (Gene identification) Protein structure/function Phylogenetic analysis Comparative genomics Genome assembly Genome annotation

Genomic Diversity of biocontrol Pseudomonas spp. Loper et. al 2012

Partnership for Life Science Education Implementing Vision and Change PULSE –39 Leadership Fellows; all with leadership experience in driving educational change –Growing community of stakeholders PULSE is an Inclusive National Effort –Anyone can join (Students, faculty, administrators) PULSE was started by Currently restructuring towards a newer model Departmental level change