Demonstrating the Biome-BGC CARBON workflow on Taverna Workbench MS11 BioVeL workshop: Ecosystem functioning & valuation web services and workflows ELTE,

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Demonstrating the Biome-BGC CARBON workflow on Taverna Workbench MS11 BioVeL workshop: Ecosystem functioning & valuation web services and workflows ELTE, 6-7 June, 2013 Eszter Lellei-Kovács MTA Centre for Ecological Research, Institute of Ecology and Botany, Vácrátót

Taverna Workbench Taverna Workbench 2.4 Taverna Workbench 2.4 – an open source workflow management system

… for creating and running workflows …

Inputs (red arrow) and outputs (green arrow) …

Where to find workflows? BioVeL Portal

myExperiment Download workflow: Biome-BGC CARBON test & demo version 1.0 annotated Where to find workflows?

The workflow „Biome-BGC CARBON test & demo version 1.0 annotated” in TAVERNA

Biome-BGC Projects database Interaction page -Before running – Settings for simulation -After running – Look at Used data and datasets Prepared datasets for the simulation: - met file:.mtc43; (spinup and normal running) - epc for ecophysiological data; - atmospheric CO2 concentration data - N deposition data - output definition -spinup and normal ini setup

Demonstrating results Biome-BGC Projects database

Demonstrating results Oensingen

Biome-BGC is a process-based biogeochemical model that can be used to simulate carbon, nitrogen and water fluxes of different terrestrial ecosystems. The BBGC CARBON executes a single simulation run, which consists of a so called spinup and normal simulation phases pipelined. The simulations require specific parameter inputs like: - spinup and normal initialization files (INI) - daily meteorology dataset file (METDATA) - ecophysiological constants file (EPC) - annual atmospheric CO2 concentration file (CO2 - optional) - annual nitrogen deposition file (NDEF - optional) - site/soil parameters - output control settings of Biome-BGC variables The Biome-BGC Projects database was developed to easy prepare, manage and share all of the above mentioned datasets and provide interaction with Taverna workflows. Learn more about BBGCDB at