Overview of Atmosphere

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Presentation transcript:

Overview of Atmosphere What is Cloud Computing? Cloud computing refers to the delivery of computing and storage capacity as a service to a heterogeneous community of end-recipients. – Wikipedia http://en.wikipedia.org/wiki/Cloud_computing There is a difference between cloud computing and cloud computing that works. Image source: http://dilbert.com/strips/comic/2009-11-18/

Overview of Atmosphere Cloud Computing on Demand On-demand computing resource built on a cloud infrastructure Virtual Machine pre-configured with: Software Memory requirements Processing power

Overview of Atmosphere Cloud Computing on Demand Fully integrated into iPlant authentication and storage and HPC capabilities Enables users to build custom images/appliances and share with community Cross-platform desktop access to GUI applications in the cloud (using VNC) Provide easy web based access to resources

Overview of Atmosphere Cloud Computing on Demand API-compatible implementation of Amazon EC2/S3 interfaces Virtualize the execution environment for applications and services Up to 12 core / 48 GB instances Access to Cloud Storage + EBS >60 hosted applications in Atmosphere today, including users from USDA, Forest Service, database providers, etc.

Overview of Atmosphere Multiple Use Cases Standalone GUI-based applications are frequently required for analysis but not easy to transform into web apps Need to handle complex software dependencies (e.g. specific bioperl version and R modules) Users needing full control of their software stack (occasional sudo access) Need to share desktop/applications for collaborative analysis (remote collaborators) Developers for application distribution Prototyping/Testing new software/modules Tailored software training setups (custom workshops/laboratory courses etc.) Extend compute capabilities of existing applications i.e. utilize iPlant API

Users of Atmosphere for teaching Workshops: Frontiers and Techniques in Plant Sciences CSHL 2011,2012 Genotyping by Sequencing Cornell Computational Biology Graduate/U. Graduate course work: BCB 660 Volker Brendel and Amy Toth Fall 2011, Iowa State University ISTA 420/520 Nirav Merchant & Eric Lyons Fall 2012, Univ. of Arizona Intro. Bioinformatics, Anne Lorraine Fall 2012, Univ. of North Carolina Popular community contributed images: PhytoMorph (Nate Miller, U. Wisconsin) Twig2Genome (Haibao Tang, JCVI) Julin Maloof, UC Davis

Overview of Atmosphere Multiple Ways to Access VNC client Command line tools (e.g. SSH)