JASPER R. CLARKSON AND TIMOTHY S. ZWIER Funding: National Science Foundation Petroleum Research Fund, Type AC Purdue Research Foundation CONFORMATIONAL.

Slides:



Advertisements
Similar presentations
The Delicate Balance of Hydrogen Bond Forces in D-Threoninol 19 Di Zhang, Vanesa Vaquero Vara, Brian C. Dian and Timothy S. Zwier Zwier Research Group,
Advertisements

Conformation Specific Spectroscopic Investigation of β- and α/β-peptides: Insight Into The Amide I and Amide II Spectral Signatures William H. James III,
Single Conformation Spectroscopy of Suberoylanilide Hydroxamic Acid (SAHA): A Molecule bites its tail Di Zhang, Jacob C. Dean and Timothy S. Zwier Zwier.
Talitha M. Selby, Jasper R. Clarkson, H. Daniel Lee, and Timothy S. Zwier Isomer Specific Spectroscopy and Conformational Energetics of ortho-, meta-,
Influence of solvation on 1-aminonaphthalene photophysics: ultrafast relaxation in the isolated molecule, molecular clusters and solution by Raúl Montero,
Hydrogen Bonding in Methanated Li + (H 2 O) 2-4 Clusters Oscar Rodriguez Jr. and James M. Lisy University of Illinois at Urbana-Champaign.
Non-radiative decay pathways of the first excited electronic states of 1:1 hydrogen bonded complexes of 7-azaindole with phenol and formamide IACS Moitrayee.
Conformational isomerization of bis-(4-hydroxyphenyl)methane in a supersonic jet expansion. Part II: Internal mixing and low barrier potential energy surface.
Condensed phase vs. Isolated gas phase spectra Solution phase A A A A A A W W W W W WW W W W W W W W W W W W: water A: sample ( nm) ( nm) Isolated.
5/23/2015 International Symposium on Molecular Spectroscopy : 65th Meeting 1 DOUBLY HYDROGEN BONDED BIS-(4-HYDROXYPHENYL)METHANE DIMERS. Chirantha P. Rodrigo,
The ultraviolet spectroscopy of phenylcyclopentene and phenylcyclopentadiene. Josh J. Newby, Ching-Ping Liu, Christian Müller and Timothy S. Zwier FD02.
Stimulated Raman scattering If high enough powered radiation is incident on the molecule, stimulated Anti-Stokes radiation can be generated. The occurrence.
Laser Induced Fluorescence Structural information about the ground and excited states of molecules. Excitation experiments  Excited state information.
Vibronic Spectroscopy of Jet-Cooled 1,4-Phenylene Diisocyanide 6/21/11 1 DEEPALI N. MEHTA, ANNA K. GUTBERLET, AND TIMOTHY S. ZWIER 66 th International.
Spectroscopic Investigation of o-, m-, and p-Cyanostyrenes International Symposium for Molecular Spectroscopy FE-12 Joseph A. Korn †, Stephanie N. Knezz.
VIBRONIC SPECTROSCOPY OF THE PHENYLCYANOMETHYL RADICAL 6/23/11 1 DEEPALI N. MEHTA, NATHANAEL M. KIDWELL, JOSEPH A. KORN, AND TIMOTHY S. ZWIER 66 th International.
RYDBERG ELECTRONS International Symposium on Molecular Spectroscopy 17 June 2008 Michael P. Minitti Brown University STEALTHY SPIES OF MOLECULAR STRUCTURE.
Fluorescence spectroscopy of jet- cooled phenylvinylacetylene in its ground and first excited states Speaker: Ching-Ping Liu Coworkers: Josh Newby and.
Nathan R. Pillsbury, Timothy S. Zwier, Department of Chemistry, Purdue University, West Lafayette, IN 47907; David F. Plusquellic, NIST, Gaithersburg,
Aloke Das Indian Institute of Science Education and Research, Pune Mimicking trimeric interactions in the aromatic side chains of the proteins: A gas phase.
UTILIZING FORCE FIELD METHODS TO EXPLORE THE POTENTIAL ENERGY LANDSCAPES OF FLEXIBLE BIOMOLECULES TF10: Zachary S. Davis †, Joanne M. Carr *, Ivan Y. W.
Wybren Jan Buma Molecular Photonics van ‘t Hoff Institute for Molecular Sciences University of Amsterdam Mechanically interlocked molecules in the gas.
VIBRATIONAL ENERGY RELAXATION OF BENZENE DIMER STUDIED BY PICOSECOND TIME-RESOLVED INFRARED-ULTRAVIOLET PUMP-PROBE SPECTROSCOPY R. KUSAKA and T. EBATA.
Microwave Spectrum of Hydrogen Bonded Hexafluoroisopropanol  water Complex Abhishek Shahi Prof. E. Arunan Group Department of Inorganic and Physical.
Novel Applications of a Shape Sensitive Detector 2: Double Resonance Amanda Shirar Purdue University Molecular Spectroscopy Symposium June 19, 2008.
Pulsed-jet discharge matrix isolation and computational study of Bromine atom complexes: Br---BrXCH 2 (X=H,Cl,Br) OSU 66 th International Symposium on.
Excited State Isomerization of a Stilbene Analog: Phenylvinylacetylene Josh J. Newby, Christian W. Müller, Ching-Ping Liu, Hsiupu D. Lee and Timothy S.
Electronic Transitions of Palladium Monoboride and Platinum Monoboride Y.W. Ng, H.F. Pang, Y. S. Wong, Yue Qian, and A. S-C. Cheung Department of Chemistry.
Adam J. Fleisher Justin W. Young David W. Pratt Department of Chemistry University of Pittsburgh Internal dynamics of water attached to a photoacidic substrate:
Elucidating the effects of amide side chain interactions in flexible biomolecules V. Alvin Shubert, Esteban E. Baquero, Jasper R. Clarkson, Timothy S.
Department of Chemistry, University of Georgia, Athens, GA National Science Foundation Infrared.
CONFORMATIONAL SPECIFIC SPECTROSCOPY OF JET COOLED 3-(4-HYDROXYPHENYL)-N-BENZYL- PROPIONAMIDE (HNBPA) ESTEBAN E. BAQUERO, V. ALVIN SHUBERT, AND TIMOTHY.
Conformation specific spectroscopy of jet- cooled 4-phenyl-1-butene Joshua A. Sebree, Josh J. Newby, Nathan R. Pillsbury, Timothy Zwier Department of Chemistry,
Bonding & dynamics of CN-Rg and C 2 -Rg complexes Jiande Han, Udo Schnupf, Dana Philen Millard Alexander (U of Md)
Electronic and vibronic spectroscopy of crown ether water complexes: benzo-15-crown-5 (B15C) and 4’-aminobenzo- 15-crown (ABC) V. Alvin Shubert and Timothy.
Copyright © Professor Sang Kuk Lee, Department of Chemistry, Pusan National University. All rights reserved. 1 The 67 th International Symposium on Molecular.
Direct Measurement of Weak Collisions and Collision Rates using High-Resolution Transient IR Absorption Spectroscopy Daniel K. Havey, Qingnan Liu, Amy.
Spectroscopy of Multiply Charged Metal Ions: IR Study of Mn 2+ (18-crown-6 ether)(MeOH) 1-3 Jason D. Rodriguez and James M. Lisy Department of Chemistry,
Spectroscopic investigation of β-peptides: Ac-β 3 -Phe-NHMe, Ac-β 3 -Phe-β 3 -Ala-NHMe and Ac-β 3 -Ala-β 3 -Phe-NHMe. Soo Hyuk Choi and Samuel H. Gellman.
1 International Symposium on Molecular Spectroscopy 64 th Meeting - June 22-26, 2009, Ohio State University, Columbus, OH Presented by Chirantha P. Rodrigo,
Conformation-Specific and Mass-Resolved, Infrared-Population Transfer Spectroscopy of the Model γ 2 -peptide Ac- γ 2 -hPhe-NHMe Evidence for the Presence.
Sand in the laboratory. Production and interrogation of gas phase silicates. Damian L Kokkin and Timothy Steimle.
Observation of Isomer Trapping in Li + (H 2 O) 4 Ar Cluster Ions Dorothy J. Miller and James M. Lisy Department of Chemistry University of Illinois at.
6/19/12 1 DEEPALI N. MEHTA, POLINA NAVOTNAYA, ALEX PAROBEK, RACHEL CLAYTON, VANESA VAQUERO VARA AND TIMOTHY S. ZWIER 67 th International Symposium on Molecular.
Hydrogen Bond Ring Opening and Closing in Protonated Methanol Clusters Probed by Infrared Spectroscopy with and without Ar-Tagging Toru Hamashima, Kenta.
Victoria P. Barber and Josh J. Newby TK14 Department of Chemistry and Biochemistry, Swarthmore College Swarthmore, PA Spectroscopic characterization.
TWO-PROTON PHOTOTAUTOMERIZATION DYNAMICS OF 7-AZAINDOLE COMPLEXES -Tapas Chakraborty Indian Association for the Cultivation of Science Calcutta, India.
Photochemical and Discharge-driven pathways to aromatics from 1,3-butadiene: Exploring aromatic production in Titan’s atmosphere. Josh J. Newby, Jaime.
Near-Infrared Photochemistry of Atmospheric Nitrites Paul Wennberg, Coleen Roehl, Geoff Blake, and Sergey Nizkorodov California Institute of Technology.
INFRARED AND ULTRAVIOLET SPECTROSCOPY OF JET-COOLED 2-BENZYLPHENOL: I STRUCTURE AND LARGE-AMPLITUDE TORSIONAL MOTION CHIRANTHA P. RODRIGO, CHRISTIAN W.
High Resolution Electronic Spectroscopy of 9-Fluorenemethanol (9FM) in the Gas Phase Diane M. Mitchell, James A.J. Fitzpatrick and David W. Pratt Department.
Dissociation Dynamics of Hydrogen-dihalogen Complexes Richard A. Loomis Washington University in St. Louis Department of Chemistry Abstract: WF12 – June.
Md Asmaul Reza, Jahangir Alam, Amy Mason, Neil Reilly and Jinjun Liu Department of Chemistry, University of Louisville JET-COOLED DISPERSED FLUORESCENCE.
Vibrational Dynamics of Cyclic Acid Dimers: Trifluoroacetic Acid in Gas and Dilute Solutions Steven T. Shipman, Pam Douglass, Ellen L. Mierzejewski, Brian.
CONFORMATION-SPECIFIC ELECTRONIC AND VIBRATIONAL SPECTROSCOPY OF DIBENZO-15-CROWN-5 ETHER IN A SUPERSONIC JET. Evan Buchanan, Chirantha P. Rodrigo, William.
Fluorescence of Matrix-Isolated Biacetyl Erin Gatrone Nathan Kuchmas C.A. Baumann University of Scranton Department of Chemistry.
CONFORMATION-SPECIFIC ELECTRONIC SPECTROSCOPY OF JET-COOLED 5-PHENYL-1-PENTENE NATHAN R. PILLSBURY, TALITHA M. SELBY, AND TIMOTHY S. ZWIER, Department.
1 The Competition Between Insertion and Surface Binding of Benzene to the Water Heptamer Patrick S. Walsh 1, Daniel P. Tabor 2, Edwin Sibert 2, and Timothy.
Analysis of Hydrogen Bonding in the OH Stretch Region of Protonated Water Clusters Laura C. Dzugan and Anne B. McCoy June 26, 2015.
Infrared Spectroscopy of Protonated Acetylacetone and Mixed Acetylacetone/Water Clusters Daniel T. Mauney, David C. McDonald II, Jonathon A. Maner and.
Encapsulation of water molecules by dibenzo- 18-crown-6-ether in a supersonic jet Ryoji Kusaka, Yoshiya Inokuchi, Kenji Kawasaki, Takayuki Ebata* Department.
Daniel M. Hewett, Simply John T. Lawler, and Timothy S. Zwier
CONFORMATIONAL EXPLOSION:
Conformational Study of Benzyl Ether
The exotic excited state behavior of 3-phenyl-2-propynenitrile
UV Spectroscopy of 3-phenyl-2-propynenitrile
Jun Jiang, Angelar Muthike, and Robert W. Field
CHONG TAO, D. BRUSSE, Y. MISHCHENKO, C. MUKARAKATE and S. A. REID,
ROTATIONAL SPECTRA OF HYDROGEN BONDED NETWORKS OF AMINO ALCOHOLS
Jaime A. Stearns, Monia Guidi, Sébastien Mercier,
Presentation transcript:

JASPER R. CLARKSON AND TIMOTHY S. ZWIER Funding: National Science Foundation Petroleum Research Fund, Type AC Purdue Research Foundation CONFORMATIONAL ISOMERIZATION BARRIERS AND DYNAMICS OF PHENOL-ETHANOLAMINE CLUSTERS.

How does solvent bind at a specific site affect the barriers to conformational isomerization of the flexible molecule? Studying Clusters Shuttling a water molecule between remote H-bonding sites on the same ‘solute’ molecule The effect of H-bonded water on an intramolecular isomerization barrier Measuring the barrier to moving from one lone pair to the other in an OH--OH H-bond TI11 TODAY, 4:36 PM 1015 McPHERSON JCP 122, (2005)

Pulsed valve To Roots pump PMT Carrier gas y x z Lens Mirror Expansion CCD SPEX Monochromator 0.75 m grating S0S0 S1S1 Zero-point Level C A B IV. UV Probe III. Collisional Cooling II. UV Dump I. UV Pump Excited Vibrational Level B*B* Expt’l protocol: 1.Cool 2.Pump 3.Dump 4.Re-cool 5.Probe A C A A B C C A B B B B B B B B C A* B* C C B A* A A A A C C A A C C B B SEP excites single conformation C A C A A B C C A B B B B B B B B C A* B* C C B A* A A A A C C A A C C B B C Experimental Setup

Macleod and Simons PCCP, 2003, 5, Complex A 0.00 kcal/mol Complex B 0.51 kcal/mol Complex C 0.73 kcal/mol Phenol-(2-aminoethanol) 1

Complex BComplex C ~200 cm -1 H O R.. C ↔ B isomerization pathway: The barrier between lone pairs on the acceptor oxygen

Complex C origin Complex B originComplex A origin 2 nd order cluster (D) LIF Phenol-(2-Aminoethanol) 1 Clusters Wavenumbers(cm -1 ) Intensity (arb. units)

Energy above ZPL (cm -1 ) next slide Gains = Hz fluorescence Dips = SEP SEP C SEP-PT C-->B SEP-PT C-->C Hz Holeburning Intensity (arb. units) Overview SEP-PT Spectra Phenol-(2-Aminoethanol) 1 C

intensity (arbitrary units) ? Upper bound 206 cm -1 Lower bound 136cm Energy above ZPL (cm -1 ) SEP C SEP-PT C-->B SEP-PT C-->C Hz Holeburning SEP-PT Spectra Phenol-(2-Aminoethanol) 1 C  B Intensity (arb. units)

SEP-PT Spectra Phenol-(2-Aminoethanol) 1 B  C Intensity (arb. units) Energy above ZPL (cm -1 ) SEP-PT B  C Upper Bound 520 cm cm -1 Lower Bound 140 cm -1 SEP-PT B  B

SEP-PT Spectra Phenol-(2-Aminoethanol) 1 C  A SEP C SEP-PT C  A SEP-PT C  B Intensity (arb. units) Energy above ZPL (cm -1 ) 1700

Why can’t we pump into and out of A? cm -1 Bounds on the barriers to isomerization Computed Barriers A cm -1 ?? B C 320 cm cm cm cm cm cm -1 A B C A B C

Black – DF Complex A Red – DF tuned out of gas pulse Short S 1 lifetime Broad, red-shifted fluorescence Population transfer out of A: Competition with H-atom transfer in the S1 state?

Conclusions: Measuring the barrier to moving from one lone pair to the other in an OH…OH H-bond: ~200 cm -1 Measuring the relative energies between Complex C and B Locating minimum energy pathways Observing possible H-atom transfer

B3LYP/6-31+G* full optimizations of minima and optimization of TS using QST3 G03. TS verified with imaginary frequency. 707 cm -1 IPA(A)-gauche1  IPA(B)-gauche1 425 cm -1 IPA(A)-gauche1  IPA(A)-gauche2 238 cm -1 IPA(A)-gauche1  IPA(A)-anti Intramolecular isomerization: Higher barrier Solvent isomerization: Lower barrier, energy flow from indole through H-bonds to ethanol torsion ‘Solute’ isomerization in competition with ‘solvent’ isomerization: IPA-ethanol

Acknowledgements Collaborators: Professor Ken Jordan Professor David Wales Dr. Dave Evans Funding: National Science Foundation Petroleum Research Foundation Purdue Research Foundation Professor Tim Zwier Zwier Group Esteban Baquero Alvin Shubert Jaime Stearns Talitha Selby Tracy LeGreve Nathan Pillsbury Bill James Josh Newby