MiRNAPredicted targetsPutative function of targets miRC1GRMZM2G029833_T01DNA binding / DNA-directed RNA polymerase miRC4 GRMZM2G171796_T01; GRMZM2G355906_T03;

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Presentation transcript:

miRNAPredicted targetsPutative function of targets miRC1GRMZM2G029833_T01DNA binding / DNA-directed RNA polymerase miRC4 GRMZM2G171796_T01; GRMZM2G355906_T03; GRMZM2G355906_T04 Phosphofructokinase, putative; glutamate decarboxylase, putative miRC5 GRMZM2G053298_T01; GRMZM2G053298_T02; GRMZM2G466549_T02; GRMZM2G140085_T01; GRMZM2G140085_T02 RWP-RK domain-containing protein; GRAS family transcription factor containing protein miR171o, miR171p GRMZM2G000039_T01 ; GRMZM2G304956_T01 SIT4 phosphatase-associated family protein; regulatory protein, putative miRC9GRMZM2G084248_T01; GRMZM2G318689_T01 Leucine-rich repeat transmembrane protein kinase, putative; ethylene receptor, putative miRC12AC _FGT007Expressed protein miRC13GRMZM2G177110_T01; GRMZM2G467356_T01 DUF260 domain containing protein, putative; ferredoxin 1-like isoform 1, putative miRC14GRMZM2G334899_T01Tubulin/FtsZ domain containing protein, putative miRC16 GRMZM2G000686_T01; GRMZM2G000686_T02 GRMZM2G000686_T03; GRMZM2G000686_T04 GRMZM2G000686_T05; GRMZM2G000686_T06 GRMZM2G000686_T07; GRMZM2G000686_T08 GRMZM2G000686_T09; GRMZM2G000686_T10 GRMZM2G165488_T01; GRMZM2G165488_T02 GRMZM2G165488_T03; GRMZM2G165488_T04 GRMZM2G091964_T01; GRMZM2G091964_T02 GRMZM2G091964_T03; GRMZM2G078124_T01 GRMZM2G418749_T01 Nuclear transcription factor Y subunit; pentatricopeptide (PPR) repeat-containing protein miRC23 GRMZM2G042347_T01; GRMZM2G056335_T01; GRMZM2G071304_T01; GRMZM2G084942_T01; GRMZM2G084942_T02; GRMZM2G088753_T01; GRMZM2G405022_T01 Peroxidase, putative; cytokinin-O-glucosyltransferase 1, putative; LIG1-putative DNA ligase I; arogenate dehydrogenase 1; 1,4- alpha-glucan-branching enzyme; GDU1, putative miR398c AC _FGT001; GRMZM2G068519_T01; GRMZM2G068519_T02; GRMZM2G162233_T01; GRMZM2G162233_T02; GRMZM2G455075_T01 Expressed protein; UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein miRC26AC _FGT001Cycloartenol synthase, putative miRC30GRMZM2G307567_T02CCR4-Not complex component, Not1domain containing protein miR171q AC _FGT003; GRMZM2G011947_T01; GRMZM2G037792_T01; GRMZM2G051785_T01; GRMZM2G060265_T01; GRMZM2G079470_T01; GRMZM2G079980_T01; GRMZM2G098800_T01; GRMZM2G098800_T02; GRMZM2G106748_T01; GRMZM2G111191_T01; GRMZM2G111191_T02; GRMZM2G418899_T01 Prenylcysteine oxidase 1 precursor, putative; scarecrow, putative; lipoxygenase, putative; zinc finger family protein, putative miRC32GRMZM2G167253_T01Receptor-like protein kinase HAIKU2 precursor, putative miRC35 AC _FGT002; GRMZM2G137037_T01; GRMZM2G137037_T02; GRMZM2G175995_T01; GRMZM2G360081_T01 FAD dependent oxidoreductase, putative; expressed protein; transcription factor binding / ubiquitin-protein ligase miRC36AC _FGT003; GRMZM2G031326_T01DNA binding / transcription coactivator; nucleolar complex protein, putative Table 3. Predicted targets of novel miRNAs identified by small RNA deep sequencing in maize

miRNAPredicted targetsPutative function of targets miRC37 GRMZM2G030823_T01; GRMZM2G030823_T02 ; GRMZM2G030823_T03; GRMZM2G090152_T02; GRMZM2G390678_T01 F-box, LRR and FBD domain containing protein; unknown protein; GDSL-like lipase/acylhydrolase, putative miRC40 GRMZM2G045421_T01; GRMZM2G102174_T01; GRMZM2G102174_T02; GRMZM2G115390_T01; GRMZM2G115390_T02; GRMZM2G115390_T03; GRMZM2G115390_T04; GRMZM2G115390_T05; GRMZM2G149175_T01; GRMZM2G149175_T03; GRMZM2G149175_T06 ; GRMZM2G369939_T01 PWWP domain containing protein; PWWP domain containing protein, expressed; unknown protein; eIF-5, putative miRC42 GRMZM2G030823_T01; GRMZM2G030823_T02; GRMZM2G030823_T03; GRMZM2G061339_T01; GRMZM2G399048_T01 F-box, LRR and FBD domain containing protein, expressed; glycosyltransferase sugar-binding region containing DXD motif, putative miRC46GRMZM2G123805_T01Lipase/ nutrient reservoir Table 3. continued