Figures and Table for Supplemental material Kemin Zhou Nov 20, 2011.

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Figures and Table for Supplemental material Kemin Zhou Nov 20, 2011

Transcription overlap Number of genes per congregation GenomeAgabi2Aspca3Spoth2Lacbi2Aspac1 %Multi genes %Genes in Cong Count Fig S1

Fig S2 Relative Expression Level of Minor Isoforms Count Agabi Aspca Spoth Lacbi2: Sanger Lacbi Aspac

SOM (std/mean) Average EST Length (nt) Agabi2 Aspca3 Aspac1 Spoth2 Lacbi2 Fig S3

Agabi2 NAG Fig S4 NAG

Aspca3 Fig S5 NAG

Lacbi2 Fig S6 NAG

Spoth2 Fig S7 NAG

Aspac1 Fig S8 NAG

AS Category Fraction of Total Fig S CE CE_AD CE_AA CE_ADAA CEorAAend ME Other

A B E D C Fig S10 Intron Length (nt) Frequency Intron Length (nt) Major: Expression Level > median of complete models Major isoform of AS All: Intron from partial + complete models

2.6E E E Fig S11 Fraction