SPECTRUM OF THE BTK GENE MUTATIONS IN CZECH XLA PATIENTS Tomáš Freiberger Molecular Genetics Lab Centre for Cardiovascular Surgery and Transplantation.

Slides:



Advertisements
Similar presentations
Implications of Consanguinity for Routine Diagnostic Testing and Development of Specialist Services Teresa Lamb Clinical Scientist Leeds DNA Laboratory.
Advertisements

Making Sense of Novel Prognostics: NOTCH1, SF3B1 Jennifer R Brown, MD PhD Director, CLL Center Dana-Farber Cancer Institute October 24, 2014.
Assessment of a high-throughput DNA melting analysis assay for rapid screening of gene variants in the ornithine transcarbamylase gene K. Sumner*, L. Hubley*,
Development of a molecular genetic diagnostic service for X-linked ichthyosis, with emphasis on carrier detection Eleanor Reavey West of Scotland Regional.
Polymorphisms: Clinical Implications By Amr S. Moustafa, M.D.; Ph.D. Assistant Prof. & Consultant, Medical Biochemistry Dept. College of Medicine, KSU.
Polymerase Chain Reaction (PCR) and Its Applications by Ayaz Najafov Boğaziçi University Department of Molecular Biology and Genetics.
Case 6 Manzhu Kang, Phil Soto, Ivana Olguin California State University, Los Angeles.
Using SSCP to Screen for Chicken B Histocompatibility Haplotypes.
Generation of antibodies and T cell receptors by V(D)J recombination Lymphocyte development: generation of cells with functional and useful antigen receptors.
Mitochondrial DNA maintenance disorders Carl Fratter Oxford Medical Genetics Labs.
The Wiskott-Aldrich Syndrome: An X-linked Primary Immunodeficiency
Immune Deficiency Disorders “Nature’s experiments” connect basic science and clinical application.
Caroline O.A. Melo, Daniela M. Silva, and Aparecido D. da Cruz
Primary Immunodeficiency Disorders (PID) Soheila Alyasin M.D. AssOCIAT Professor of Pediatrics Division of Immunology and Allergy.
Expanded PLA2G6 Copy Number Variant Analysis in Patients with Infantile Neuroaxonal Dystrophy (INAD) Danielle Crompton, P. K. Rehal, L. MacPherson, K.
Investigating the use of Multiple Displacement Amplification (MDA) to amplify nanogram quantities of DNA to use for downstream mutation screening by sequencing.
Clinical and Molecular Genetic Spectrum of Slovenian Patients with CGD ESID Prague Spring Meeting 2007 Avčin T, Debeljak M, Markelj G, Anderluh G*, Glavnik.
1 B Cell repertoire - role of B cell antigen receptors (BCR)
Normal haemopoiesis. ABNORMALITIES IN THE HEMOPOIETIC SYSTEM CAN LEAD TO HEMOGLOBINOPATHIES HEMOPHILIA DEFECTS IN HEMOSTASIS/THROMBOSIS HEMATOLOGICAL.
Hemophilia Research Center for Genetic Engineering and Biotechnology “Georgi D. Efremov”, MASA What is: Hemophilia is an X-linked congenital bleeding disorder.
Apparent homozygous deletion identified in Alström syndrome patient Elizabeth Perrott West Midlands Regional Genetics Laboratory.
YUEMIN DING Neuro-oncology Group Department of Molecular Neuroscience
A Diagnostic Testing Service for Hypophosphatemic Rickets
-Know that we can manipulate genomes by inserting or deleting certain genes. -What about synthesizing an entirely novel genome using sequencing technology?
Primary antibody deficiencies in Estonia Sirje Velbri Tallinn Childrens’ Hospital, Estonia.
Molecular Basis for Relationship between Genotype and Phenotype DNA RNA protein genotype function organism phenotype DNA sequence amino acid sequence transcription.
Molecular Genetics in the Von Willebrand disease Ghasem Rastegarlari.
1 LYNCH SYNDROME EPCAM FAMILY WITH PREDOMINANT COLORECTAL CANCER HENRY T. LYNCH, MD; STEPHEN N. THIBODEAU, PHD; CARRIE SNYDER, MSN, RN, APNG; JENNIFER.
1 Dr Pupak Derakhshandeh, PhD Ass Prof of Medical Science of Tehran University SMA SPINAL MUSCULAR ATROPHY.
Change in Referral Diagnoses and Diagnostic Delay in Hypogammaglobulinaemic Patients. Jiri Litzman Dept. Clin. Immunol. Allergol Masaryk University, Brno,
PID patients in Motol Radana Zachová Institute of Immunology University hospital Prague Motol, Czech Republic ESID Prague Spring meeting 2005.
Immune deficiency disorders
 &  GENE CLUSTERS Hb Double Helix DNA.
Probes and screening for disease. Background Genetic disorders are often the result of gene mutations. People with a mutant allele often have a family.
EML4-ALK non-small cell lung cancer
What is PCR? : Why “Polymerase”?
Figure 6: BTK splice variants in B cell precursor leukemia
Frequency of MBL defective haplotypes in Czech population
Clinical, immunological and pathological features of severe combined immunodeficiency (SCID) at PGIMER, Chandigarh Amit Rawat¹, Sagar Bhattad¹, Deepti.
Spectrum of BTK gene mutations in a single-centre cohort of
Polymerase Chain Reaction (PCR) and Its Applications
Immunodeficiency disorders
Molecular study of two types of mutations in promoters of IL-2 and IL-10 genes in Iraqi patients with Tuberculosis Mazin S.Salman Awatif.
Radiosensitive SCID patients with Artemis gene mutations show a complete B-cell differentiation arrest at the pre–B-cell receptor checkpoint in bone marrow.
Humoral immune response
Centre for Primary Immunodeficiencies, Masaryk University Brno, CR
Immunodeficiencies.
VWF sequence variants: innocent until proven guilty
INTRIGUING COMBINATION OF MUTATIONS IN WAS PATIENT
Relationship between Genotype and Phenotype
Volume 18, Issue 4, Pages (April 2003)
Volume 54, Issue 3, Pages (September 1998)
Structure of the GM2A Gene: Identification of an Exon 2 Nonsense Mutation and a Naturally Occurring Transcript with an In-Frame Deletion of Exon 2  Biao.
Terminal Osseous Dysplasia Is Caused by a Single Recurrent Mutation in the FLNA Gene  Yu Sun, Rowida Almomani, Emmelien Aten, Jacopo Celli, Jaap van der.
Survival of Male Patients with Incontinentia Pigmenti Carrying a Lethal Mutation Can Be Explained by Somatic Mosaicism or Klinefelter Syndrome    The.
Genetics of Pulmonary Diseases
CVID- Major features Recurrent pyogenic infections, with onset at any age Increased incidence of autoimmune disease Total immunoglobulin level < 300 mg/dL.
A Homozygous Nonsense Mutation in Type XVII Collagen Gene (COL17A1) Uncovers an Alternatively Spliced mRNA Accounting for an Unusually Mild Form of Non-Herlitz.
J. H. D. Bassett, S. A. Forbes, A. A. J. Pannett, S. E. Lloyd, P. T
Genetic Background of Congenital Chloride Diarrhea in High-Incidence Populations: Finland, Poland, and Saudi Arabia and Kuwait  Pia Höglund, Mari Auranen,
A Mutation Hot Spot for Nonspecific X-Linked Mental Retardation in the MECP2 Gene Causes the PPM-X Syndrome  Sabine M. Klauck, Susan Lindsay, Kim S. Beyer,
Mutations of the Ephrin-B1 Gene Cause Craniofrontonasal Syndrome
Immunodeficiency disorders
Volume 58, Issue 2, Pages (August 2000)
Relationship between Genotype and Phenotype
The sh339 and qmc554 alleles of gfi1b.
Early Onset of Severe Familial Amyotrophic Lateral Sclerosis with a SOD-1 Mutation: Potential Impact of CNTF as a Candidate Modifier Gene  Ralf Giess,
Negative Selection at the Pre-BCR Checkpoint Elicited by Human μ Heavy Chains with Unusual CDR3 Regions  Yoshiyuki Minegishi, Mary Ellen Conley  Immunity 
Mutua C, Karimi. D, Irungu. A, Patil. R, Ngwatu
Identification of a New Splice Form of the EDA1 Gene Permits Detection of Nearly All X- Linked Hypohidrotic Ectodermal Dysplasia Mutations  Alex W. Monreal,
Presentation transcript:

SPECTRUM OF THE BTK GENE MUTATIONS IN CZECH XLA PATIENTS Tomáš Freiberger Molecular Genetics Lab Centre for Cardiovascular Surgery and Transplantation University Centre for Primary Immunodeficiencies Brno, Czech Republic

X - L INKED A GAMMAGLOBULINEMIA u males after 6 M of age u absence of B lymphocytes in PB, severe hypogammaglobulinemia u increased susceptibility to infections y otitis, sinusitis, bronchitis, pneumonia; skin infections; meningitis, sepsis, osteomyelitis (pyogenic encapsulated bacteria) y diarrhea (Salmonella, Giardia lamblia, Campylobacter) y meningoencephalitis (enteroviruses) u prognosis improved after introduction of IVIG ther.

X - L INKED A GAMMAGLOBULINEMIA u mutations in the BTK gene u BTK important for B cell development, role in pre- BCR signaling pathway u cytoplasmic protein: 659 AA, 77 kDa PH TH SH3 SH2 KINASE ~ 140 ~ 75 ~ 65 ~ 100 ~ 280 AA

Block in B cell development Pro-B PreB-I Pre-B-II Immature B Mature B CD22 CyIgα TdT CD22 CyIgα CD22 CyIgα CD19 TdT ψL CD10++ CD22 CyIgα CD19 TdT ψL CD10+ CD22 CyIgα CD19 ψL CD10+ Cy μ CD22 CyIgα CD19 CD10+ Cy μ CD22 CyIgα CD19 CD10+ SmIgM CD22 CyIgα CD19 CD10+ SmIgM SmIgD Rag+ DHJH Rag+ VLJL Rag+ VHJH Rag- adapted from Noordzij et al., 2002

pre-BCR signaling pathway V-preB λ5/14.1 Syk Igα μ NF-κB Igβ Ca ++ influx Lyn BLNK BTK PLCγ

BTK mutations u BTK gene: Xq u 19 exons, 37.5 kb u mRNA 2591 bp u mutations scattered all over the gene

XLA: genotype-phenotype correlation ! weak genotype-phenotype correlation ! mutations in the same domain the same type of mutations the same mutation various number of B cells in PB various immunoglobulin levels various clinical features

Agammaglobulinemia: one phenotype various gene defects BTK (X)

pre-BCR signaling pathway V-preB λ5/14.1 Syk Igα μ NF-κB Igβ Ca ++ influx Lyn BLNK BTK PLCγ

Agammaglobulinemia: one phenotype various gene defects BTK (X) μ chain (AR)

pre-BCR signaling pathway V-preB λ5/14.1 Syk Igα μ NF-κB Igβ Ca ++ influx Lyn BLNK BTK PLCγ

Agammaglobulinemia: one phenotype various gene defects BTK (X) μ chain (AR) λ5/14.1 (AR)

pre-BCR signaling pathway V-preB λ5/14.1 Syk Igα μ NF-κB Igβ Ca ++ influx Lyn BLNK BTK PLCγ

Agammaglobulinemia: one phenotype various gene defects BTK (X) μ chain (AR) λ5/14.1 (AR) Igα (AR)

pre-BCR signaling pathway V-preB λ5/14.1 Syk Igα μ NF-κB Igβ Ca ++ influx Lyn BLNK BTK PLCγ

Agammaglobulinemia: one phenotype various gene defects BTK (X) μ chain (AR) λ5/14.1 (AR) Igα (AR) BLNK (AR)

pre-BCR signaling pathway V-preB λ5/14.1 Syk Igα μ NF-κB Igβ Ca ++ influx Lyn BLNK BTK PLCγ

Agammagobulinemia: candidate genes for causal mutations V-preB λ5/14.1 Syk Igα μ NF-κB Igβ Ca ++ influx Lyn BLNK BTK PLCγ

Agammaglobulinemia: one phenotype various gene defects BTK (X) μ chain (AR) λ5/14.1 (AR) Igα (AR) BLNK (AR) Igβ (AR)

pre-BCR signaling pathway V-preB λ5/14.1 Syk Igα μ NF-κB Igβ Ca ++ influx Lyn BLNK BTK PLCγ

Agammagobulinemia: candidate genes for causal mutations V-preB λ5/14.1 Syk Igα μ NF-κB Igβ Ca ++ influx Lyn BLNK BTK PLCγ

MUTATION DETECTION u DNA from 27 unrelated Czech XLA patients u mutation screening (19 exons) y PCR + DGGE and/or SSCP u determination of mutation y direct sequencing u verification of mutation y restriction analysis y second strand sequencing

BTK – 11. EXON (p.E301del) DGGE SSCP m wt wt wt wt wt wt m wt

SEQUENCING ATG ATT p.M450I

RESULTS I y 23 unique mutations detected in 24 unrelated patients 5 affected male relatives 26 female carriers 10 mutations not described previously y No mutation detected in 3 unrelated patients (all regions sequenced) 1x homozygous deletion of the µH gene (JJ van Dongen) 2x analysis in progress

BTKbase ( Czech patients RELATIVE FREQUENCY OF MUTATIONS

BTKbase ( Czech patients LOCATION OF MUTATIONS PH TH SH3 SH2 KINASE ~ 140 ~ 75 ~ 65 ~ 100 ~ 280 AA

RESULTS II y 6x polymorphism 4x previously described: c t>c; c g>a; c a>g; c.2031c>t 2x novel: c g>c; c c>t

SSCP vs. DGGE u both methods used in 13 cases with proven mutation y DGGE positive in 12/13 patients (sensitivity 92%) y SSCP positive in 10/13 patients (sensitivity 77%) y DGGE or SSCP positive in 13/13 patients (= 100%) u DGGE is efficient method for mutation screening of the BTK gene

CONCLUSION u Detection of mutations in the BTK gene enables: y confirmation of diagnosis y identification of mutation carriers y prenatal diagnosis in affected families

ACKNOWLEDGEMENTS Barbora Ravčuková Lucie Grodecká Jan Nejedlík Jiřina Bartůňková, Anna Šedivá, Radana Zachová, Václava Gutová, Eva Pařízková, Helena Schneiderová, Olga Škopková, Olga Kryštůfková, Vítězslav Novák Jiří Litzman

SSCP wt DNA mutant DNA denaturation different migration pattern of denatured DNA single strands (non-denaturing PAGE) wt m

DGGE wt DNA mutant DNA denaturation and slow renaturation wt m low denaturant high denaturant primers - GC clamp