BioDeep Meeting V: Marseilles, 13-15 th April 2002 (1 st report) Workpackage 5 : Microbial metabolic activities Armand Bianchi, Jean Garcin, Christian.

Slides:



Advertisements
Similar presentations
Rapid determination of Biochemical Oxygen Demand (BOD)
Advertisements

Physico-chemical and biological characteristics of the Blanes site.
NCP ( mmol O 2 m -2 d -1 ) BP (mmol C m 2 d -1 ) NET ECOSYSTEM METABOLISM IN THE NW IBERIAN UPWELLING SYSTEM ON AN ANNUAL CYCLE C.G.Castro, Arbones B,
PH of the Lower Cape Fear Estuary Nate Cline CHM 576 November 30, 2009.
Figure 1: Location map of hydrographic and coastal sampling stations.
Flux studies in contrasting environments (obj. 2) The role of heterotrophy (bact. microzoo)
Primary Production measurements over a daily cycle in Clark’s Cove Ayan Chaudhuri, Lin Zhang, Anne-Marie Brunner MAR640 – Global Marine Biogeochemistry.
Dissolution of calcite in sediments -- metabolic dissolution.
The nitrogen cycle. Animals can not fix N2. They get their nitrogen by eating plants or by eating something that eats plants. Nitrogen Fixation is very.
What is Stress? Adverse factor(s) that inhibits ‘normal’ physiology
Foodweb support for the threatened Delta smelt: Microzooplankton dynamics in the low salinity zone of San Francisco Bay J.K. York 1, B. Costas 1, G. McManus.
Pressure Pressure changes provide the push that drive ocean currents Key is the hydrostatic pressure Hydrostatic pressure is simply the weight of water.
Hawaii Ocean Time-series (HOT) program Marine Microplankton Ecology
The Ocean’s primary Productivity
Phytoplankton Dynamics Primary Productivity (g C/m 2 /yr) Gross (total) production = total C fixed Net production = C remaining after respiration Standing.
OS13B Modeling the Distribution and  15 N of Nitrogen Gas and Nitrogen Species in the Black Sea S. K. Konovalov 1, C. A. Fuchsman 2 and J.W. Murray.
Determination of the origin of the contamination of the patient.
Bacterial Abundance Objective Measure bacterial numbers and mass per unit volume. Note, we are not concerned with identification here. Why do we want to.
Dissolved iron distributions and Fe-limitation C. Guieu & S. Bonnet Laboratoire d’océanographie de Villefranche S. Blain Laboratoire d’océanographie et.
University of Essex BIODEEP-WP3 Analysis of species diversity, community structures and phylogeny of microorganisms and meiofauna in the Mediterranean.
Marine Ecosystem Structure and Organisms Ecosystem = A biotic community and its interaction with the abiotic environment. Flow of Energy and Cycling of.
Natural Selection Best adapted survives and reproduces!
Bacterial communities in the seawater-brine chemocline in deep anoxic hypersaline basins (DHABs) in the eastern Mediterranean Sea Borin S., Daffonchio.
Salinity, dissolved oxygen, and nutrient concentrations in Oyster Pond, Falmouth, Massachusetts Karen Bishop and Michael Perret: Marine Ecology, Prof.
SEASONAL CHANGES IN BENTHIC FLUXES AND NET ECOSYSTEM METABOLISM IN THE RIA DE VIGO (NW SPAIN) F. Alonso-Pérez, Carmen G. Castro, Zuñiga, D., B. Arbones.
Bacterial production and factors limiting bacterial production BIOSOPE project France Van Wambeke LMGEM, Marseille Villefranche-sur-Mer, presentation 27/01/2004.
RA-228 AND RA-226 FROFILES FROM THE NORTHERN SOUTH CHINA SEA Hsiu-Chuan Lin, Yu-Chia Chung and Chi-Ju Lin Institute of Marine Geology and Chemistry, National.
The distribution of dissolved zinc in the South Atlantic as part of the UK GEOTRACES Programme UK GEOTRACES N. Wyatt 1, A. Milne 1, M. Woodward 2 G. Henderson.
CoNISMa, Consorzio Nazionale Interuniversitario Scienze del Mare Partner 1c DISTAM Università degli Studi di Milano Daniele Daffonchio Tullio Brusa Sara.
CoNISMa, Consorzio Nazionale Interuniversitario Scienze del Mare Partner 1c DISTAM Università degli Studi di Milano Daniele Daffonchio Tullio Brusa Sara.
BIODEEP WP 2 Chemical characterization of seawater/brine/ sediments and related fluxes. A. watercolumn/brine analyses (UU) A. watercolumn/brine analyses.
Diversity and Functional Variation of Denitrifying Bacterial Communities in the Cape Fear River Estuary Brian Shirey Marine Biology.
Bacterial and Archaeal Communities in the Brine/Seawater Interface of Four Different Brine Lakes in the Mediterranean Sea. Henk Bolhuis Paul van der Wielen.
BIODEEP MEETING (Venice, October ). Problems experienced during 2001 cruise Unreliable performance in high pressure (>2500 mwd) of SCIPACK/SCISKID.
Module 18: One Way ANOVA Reviewed 11 May 05 /MODULE 18 This module begins the process of using variances to address questions about means. Strategies.
CoNISMa, Consorzio Nazionale Interuniversitario Scienze del Mare Partner 1c DISTAM Università degli Studi di Milano Daniele Daffonchio Tullio Brusa Sara.
PH and Chemical Equilibrium. Acid-base balance Water can separate to form ions H + and OH - In fresh water, these ions are equally balanced An imbalance.
Sequencing the World of Possibilities for Energy & Environment.
Getting STOQ’d about HOTs Graphs. Prochlorococcus This is a photosynthesizing marine microbe – it uses light and CO 2 to produce glucose and oxygen. 50%
WP5 - MICROBIAL METABOLIC ACTIVITIES CNRS DR 12 - LMM BACTERIAL ACTIVITIES * STRICT ANAEROBIC ACTIVITIES * Methane Production (MP) * Sulfate Reduction.
Iron : Chemistry, sources and sinks..  Iron is the limiting factor in the surface water of S.O.  HNLC conditions « Iron hypothesis » (Martin et al.
Adel Sharif University of Surrey
Δ 56 Fe – Motivation GA10 Samples & Planned Work We have deep water profiles from the trace metal casts For JC068 we have stations 8, 11, 12, 13, 16, 18.
University of Essex BIODEEP-WP3 Analysis of species diversity, community structures and phylogeny of microorganisms and meiofauna in the Mediterranean.
Use of T-RFLPs for analyzing substrate attached bacteria in biofilms in the deep-waters of the Hellenic Trench (Ionian Sea) Christian-Albrechts-University.
HPSS: High Pressure Serial Sampler
BIODEEP MEETING - Marseille, April 2002 Workpackages 4 and 5 - Fabienne MOREL, Sam DUKAN Objectives : isolation of new strains from DHABs Interface.
Benthic community structure Decisions made from the 1 st cruise results: –Macrofauna absent from the brines –Meiofauna present and different between the.
Eutrophication, Hypoxia, and Ocean Acidification Puget Sound Oceanography 2011.
WP2 Objective # 3: Characterise the relevant fluxes and sedimentation rates in studied areas by using sediment traps Analysis of sediment trap material:
University of Essex BIODEEP-WP3 Analysis of species diversity, community structures and phylogeny of microorganisms and meiofauna in the Mediterranean.
Marine Biology What it takes to be alive. © 2002 Brooks/Cole, a division of Thomson Learning, Inc. Being Alive What are characteristics of all living.
© 2014 Pearson Education, Inc. Chapter 15 Animals of the Benthic Environment Rocky and sandy shores Coral Reef Deep Sea.
Dissolution of calcite in sediments -- metabolic dissolution.
Biological adaptation to DHABs
Partner 1c CoNISMa, Consorzio Nazionale Interuniversitario Scienze del Mare DISTAM Università degli Studi di Milano Daniele Daffonchio Tullio Brusa Sara.
Audrey DUCLOS1, C. Proust2,3, J. Daubech2, and F. Verbecke1
WP5 - MICROBIAL METABOLIC ACTIVITIES CNRS DR 12 - LMGEM
BIODEEP-WP4 BIODEEP-WP5 Andrea Sass , Terry McGenity
Eddy correlation – basic principles
Table S1: Chemical analysis and bacterial abundance of ice meltwater from EME and DLE Lee et al, Supporting Online Material.
Pressure Chapter 43.
B21A Microbial Growth Inferred from Nutrient Depletion in Deepwater Horizon Submerged Oil/Gas Plumes  Alan M. Shiller and DongJoo Joung; University.
Aquatic microbial groups
Life under the photic zone Deep Sea Biology Life under the photic zone.
BIODEEP WP 2 Chemical and physical analyses of DHAB´s.
Chapter 6 Tidal Power.
Cell Respiration Topic 2.8.
Fig. 2 2D vertical Br−tracer penetration, alkalinity, and bacterial distributions. 2D vertical Br−tracer penetration, alkalinity, and bacterial distributions.
Sample Proofs 1. S>-M A 2. -S>-M A -M GOAL.
Presentation transcript:

BioDeep Meeting V: Marseilles, th April 2002 (1 st report) Workpackage 5 : Microbial metabolic activities Armand Bianchi, Jean Garcin, Christian Tamburini Proof for the existence of bacterial life in extreme and selective environments (high pressure, anoxia, hypersalinity…) 1 - BioDeep – WP5 – Marseilles, 13-15th April 2002

Sampling? Interface brine-sediments and sediments with multicorrer Brines with Niskin and HP5L fitted on the Scipack Seawater-Brine interface with Niskin fitted on the Scipack Normal seawater with HPSS 2 - BioDeep – WP5 – Marseilles, 13-15th April 2002

Bacterial production Respiration (CO 2 ) prokariotic Organic polymers Uptake of compounds < 600 Da organic monomers Topics and measurements realized ectoenzymatic activities 3 - BioDeep – WP5 – Marseilles, 13-15th April 2002

pmol L EAA PA Glutamate uptake (pmol L -1 ) Depth (m) 0510 Bacterial production (ng C L -1 ) GR BP GA References for ectoenzymatic activity, bacterial production and glutamic acid uptake in the whole “normal” water column GA: glutamic acid assimilation GR: glutamic acid respiration BP: bacterial biomass EAA: aminopeptidase activity PA: phosphatase activity 4 - BioDeep – WP5 – Marseilles, 13-15th April 2002

L’Atalante basin: an exemple of vertical profile of aminopeptidase rates nmol L -1 h -1 "Normal" sea-water 3000m-depth Seawater – brine interface Body brine Brine – sediment interface µmol L -1 h -1 Sediment 0-2 cm Sediment 2-4 cm 5

Seawater – brine interface: differences between rates for the four basins D: Discovery A: L’Atalante U: Urania B: Bannock DW: Deep-water Aminopeptidase pM h DAUBDW Phosphatase DAUBDW Glutamate Assimilation pM h Glutamate respirationBacterial Production ng C L -1 h -1 DAUBDWDAUB DAUB n.d. n.d.: not determined 6

Body brine: differences between rates for the four basins Aminopeptidase pM h Phosphatase Glutamate Assimilation pM h Glutamate respirationBacterial Production ng C L -1 h -1 D: Discovery A: L’Atalante U: Urania B: Bannock DW: Deep-water DAUBDW DAUB DAUB DAUB DAUBDW n.d. n.d.: not determined 7

Body brine: differences between rates for the four basins Aminopeptidase pM h Phosphatase D: Discovery A: L’Atalante U: Urania B: Bannock DW: Deep-water DAUBDW DAUB n.d.: not determined Glutamate Assimilation pM h Glutamate respirationBacterial Production ng C L -1 h -1 DAUBDW DAUB DAUBDW n.d. 7

Brine – sediment interface : differences between rates for the four basins AminopeptidasePhosphatase Glutamate respiration n.d. Glutamate Assimilation n.d pM h n.d pM h D: Discovery A: L’Atalante U: Urania B: Bannock SW: Sediments outside basin DAUBSWDAUB DAUB DAUB n.d.: not determined 8

Sediments: differences between rates for the four basins AminopeptidasePhosphatase Glutamate respiration µM h nM h D: Discovery A: L’Atalante U: Urania B: Bannock SW: Sediments outside brine DAUBSWDAUB DAUB l.d. l.d.: lower than detectable l.d. DISCOVERY sediments collected with box correr (Biodeep cruise – August 2000) 10 - BioDeep – WP5 – Marseilles, 13-15th April 2002

Sediments: differences between rates for the four basins AminopeptidasePhosphatase Glutamate respiration µM h nM h D: Discovery A: L’Atalante U: Urania B: Bannock SW: Sediments outside brine DAUBSWDAUB DAUB l.d. l.d.: lower than detectable l.d. 9 - BioDeep – WP5 – Marseilles, 13-15th April 2002

Are DHABs’ bacteria adapted to these extreme environmental conditions? - HP: samples maintained in ambient condition (anoxia, high pressure, ionic equilibrium…) + guarantee for aseptic condition -DEC: samples decompressed (change in pressure, ionic equilibrium,anoxia?…) 10 - BioDeep – WP5 – Marseilles, 13-15th April 2002 High Pressure Bottle

Are DHABs’ bacteria adapted to these extreme environmental conditions? Average = 10.3 n = 13 Pe NSW Average = 11,5 n = 7 Pe brine Pe = HP DEC rates measured on samples decompressed rates measured in ambient condition = 11

Conclusion  Bacterial activities were detected within all niches sampled: seawater – brine interface, brine, brine – sediment interface and sediment of all DHABs  Distribution of studies activities within the different niches differ for each basin  Aminopeptidase activity was higher in brines comparatively to "normal" deep-sea water  Glutamic acid uptake in DHABs sediment was lower than in "normal" deep sediments  Brine-living bacteria appear to be adapted to these special ambient conditions (high pressure, high salinity, anoxia,…) It’s the first demonstration of bacterial activities using an experimental strategy which avoided pressure, oxic, …, stresses during retrieval, incubation and sub-sampling BioDeep – WP5 – Marseilles, 13-15th April 2002

Discussion… Interface or brine sampling? 12 - BioDeep – WP5 – Marseilles, 13-15th April 2002  Bacteria adapted?  But also bacteria originated of the seawater column We pointed out life and activities with bacteria adapted We need result. Is it possible to have safe samples in interface like within the body brine? We have seen the difficulties to compare results obtained at the interface. Maybe, it is more reasonnable to intensify sampling within the bodin brine…

Thanks for your attention…