Coreoidea Species File Online Laurence Livermore 5 th IHS Quadrennial Meeting – July 2014 Lessons Learned in Creating a Comprehensive Taxonomic Inventory.

Slides:



Advertisements
Similar presentations
Specimen Image Database (SID) Vince Smith*, Simon Rycroft & Rod Page University of Glasgow, Glasgow, UK *Present Address: Illinois Natural History Survey,
Advertisements

Australian Faunal Directory (AFD) and Australian Plant Census (APC): Content, Architecture and Services Documenting and delivering nomenclature and taxonomy.
Environmentally Sustainable Australia Atlas of Living Australia presentation to Environmentally Sustainable Australia Expert Working Group Donald Hobern,
Don’t make me think Biodiversity data publishing made easy Vince Smith, Alice Heaton, Laurence Livermore, Simon Rycroft, Ben Scott & Lyubomir Penev* The.
Web-based Specimen Databasing: Lessons from the Plant Bug Planetary Biodiversity Inventory Project presented by Randall T. Schuh Curator and Chair Division.
Publish or perish? Linking Scratchpads and the new Biodiversity Data Journal for streamlining publication of botanical data D.N Koureas 1, L. Penev 2 &
PlantCollections A Community Solution An Institute of Museum and Library Services National Leadership Grant Building Digital Resources.
Odour of Chrysanthemums Online access to a short story by D H Lawrence Group for Literary Archives and Manuscripts Manchester 26 March 2010 Dorothy Johnston.
Bringing Science to the World Museum Victoria Natural Science Collections Online 2008 EMu Users’ Meeting, Wellington, New Zealand Alex Chubaty, Collection.
A centre of expertise in data curation and preservation MIS Seminar :: University of Edinburgh :: 2 October 2006 Funded by: This work is licensed under.
IDigBio is funded by a grant from the National Science Foundation’s Advancing Digitization of Biodiversity Collections Program (Cooperative Agreement EF ).
OpenUp! A New Project on Opening up the European Natural History Heritage for EUROPEANA W. G. Berendsohn, A. K. Michel, A. Güntsch, W.-H. Kusber (2011)
Data Sources & Using VIVO Data Visualizing Scholarship VIVO provides network analysis and visualization tools to maximize the benefits afforded by the.
BIS TDWG Conference 28 October 2013, Florence Documenting data quality in a global network: the challenge for GBIF Éamonn Ó Tuama, Andrea Hahn, Markus.
The useful seaweeds of Africa online. SeaweedAFRICA is a major EU funded, Fifth Framework Project and is co-ordinated from the AlgaeBase Centre in the.
THE DATA CITATION INDEX AN INNOVATIVE SOLUTION TO EASE THE DISCOVERY, USE AND ATTRIBUTION OF RESEARCH DATA MEGAN FORCE 22 FEBRUARY 2014.
BIOPAMA Regional Reference Information System and the Digital Observatory of Protected Areas Steve Peedell European Commission Joint Research Centre BIOPAMA.
Fourth Annual Summit | Feb | Tucson, AZ Scratchpads for community involvement for natural history collections Dr Dimitris Koureas Biodiversity.
Species Banks a GBIF mechanism to provide electronic access to quality species information Peter H. Schalk, Marc Brugman ETI, University of Amsterdam Tinde.
PESI Pan-European Species-directories Infrastructure European GBIF nodes Meeting — Paris, 4 April 2011 Walter Berendsohn (based on presentation by Yde.
Sustainability of EDIT Informatics Activities. BoD working group on sustainability Executive Summary, 20th July 2009: “… set of themes we are sure we.
‘Moodling in’: Using a virtual learning environment to deliver staff induction An interactive workshop presented by Andrea Lambon Assistant Director, Library.
Nurturing a community based sustainability model Support and outreach structures in Scratchpads Livermore L. & Koureas D. Biodiversity Informatics Group.
OCLC Online Computer Library Center CONTENTdm ® Digital Collection Management Software Ron Gardner, OCLC Digital Services Consultant ICOLC Meeting April.
Scratchpads Publication Module - A paradigm shift in publishing RBG Kew, Seminar,
Fermilab’s Envoy CRM System Kevin Munday, Xeno Media October 26, 2006.
Europeana Libraries: what is the value of a library domain aggregator? Susan Reilly (LIBER) LIBER 2012, Tartu.
@dimitriskoureas making small data… big. Publications based on countless specimens, images, maps, keys and datasets Typically generated by small communities.
MARKETING STRATEGIES More information:
1 DanBIF Danish Biodiversity Information Facility Arbejdsseminar om GBIF i Norge Norges Forskningsråd, Oslo 25. September 2003 Isabel Calabuig.
Per Møldrup-Dalum State and University Library SCAPE Information Day State and University Library, Denmark, SCAPE Scalable Preservation Environments.
GLOBAL BIODIVERSITY INFORMATION FACILITY Cataloging and using Taxonomic Data The Global Names Architecture David Remsen Senior Programme Officer, ECAT.
EUscreen: Examining An Aggregator ’ s Role in Digital Preservation Samantha Losben Digital Preservation - Final Project December 15, 2010.
Digitization of Natural History Collections (DIGIT) Larry Speers Program Officer Digitization of Natural History Collections Data TDWG Annual Meeting Oct.
Topic Rathachai Chawuthai Information Management CSIM / AIT Review Draft/Issued document 0.1.
MEDIN Partners Meeting 2010 Submitting data to and using Data Archive Centres.
A curation interface for reconciliation of species names for India. Thomas Vattakaven and R. Prabhakar, India Biodiversity Portal, Strand Life Sciences,
Scratchpads The virtual research environment for biodiversity data Simon Rycroft, Dave Roberts, Vince Smith, Alice Heaton, Katherine Bouton, Laurence Livermore,
1 Metadata –Information about information – Different objects, different forms – e.g. Library catalogue record Property:Value: Author Ian Beardwell Publisher.
An Introduction to Scratchpads: Making your data work for you Laurence Livermore Natural History Museum, London Joinville, Brazil.
Isabel Calabuig Lotte Endsleff 1 NODES regional MEETING Europe Digitarium,
From Small to Big… Gail Kampmeier Illinois Natural History Survey University of Illinois
Biodiversity literature mark-up Compelling use cases for Natural History Collections Dr Dimitris Koureas Natural History Museum London Workshop on mark-up.
Don’t make me think Biodiversity Data Publishing Made Easy Laurence Livermore, Vince Smith, Alice Heaton, Simon Rycroft, Ed Baker, Ben Scott & Lyubomir.
Harvesting Social Knowledge from Folksonomies Harris Wu, Mohammad Zubair, Kurt Maly, Harvesting social knowledge from folksonomies, Proceedings of the.
Dataset citation Clickable link to Dataset in the archive Sarah Callaghan (NCAS-BADC) and the NERC Data Citation and Publication team
Progress Alastair Culham. i4Life – the BIG aim To move Catalogue of Life from a research project to a sustainable service 1.To enhance the content 2.To.
Proposal for a new RDA/TDWG WG Attribution Standards for Data Object Curation.
Task XX-0X Task ID-01 GEO Work Plan Symposium April 2014 Task ID-01 “ Advancing GEOSS Data Sharing Principles” Experiences related to data sharing.
Darrell Siebert The MOA Programme: Did we really do that?
Riccardi: DIALOGUE Workshop August 1, 2005 Supported by NSF BDI 1 Representing and Using Phylogenetic Characters in Morphbank Greg Riccardi, David Gaitros,
Using Data To Drive Practice Faith Muigai Jacaranda Health.
Dr. Patricia Mergen Biology Department Head of the Cyber-taxonomy and Biodiversity Information Unit Royal Museum For Central Africa (RMCA) Federal Scientific.
31 st May 2007Image Management in Bio- and Environmental Sciences: New Directions Julia Hoare Digitising Linnaeus: developing global access to taxonomic.
Earthworm Collections of the World Emma SHERLOCK, Laurence LIVERMORE & Ben SCOTT Natural History Museum London, Dept of Life Sciences Abstract A website.
Scratchpads Virtual Research Environments for taxonomic and biodiversity related data.
GLOBAL BIODIVERSITY INFORMATION FACILITY David Remsen Senior Programme Officer, ECAT 3 Oct th Nodes Meeting.
African Register of Marine Species AfReMas Leen Vandepitte On behalf of WoRMS data management team.
2016 WORK PROGRAMME PROGRESS UPDATE May Progress 21 sampling-event datasets.
Coordination and Policy Development in Preparation for a European Open Biodiversity Knowledge Management System Supported by the European Commission through.
GB22 TRAINING EVENT FOR NODES – 4 OCTOBER 2015 Session 02: 2015 Data Publishing Landscape Laura Russell.
RCN Development of an Online Database to Enhance the Conservation of SGCN Invertebrates in the Northeastern Region James W. Fetzner Jr. & John.
OER Commons Hubs A Primer
Who’s Who in Bioinformatics: The European Landscape
Recording wildlife and Bioblitzes
Introduction to D4Science
Biodiversity Informatics 101
Technical Outreach Expert
Presentation transcript:

Coreoidea Species File Online Laurence Livermore 5 th IHS Quadrennial Meeting – July 2014 Lessons Learned in Creating a Comprehensive Taxonomic Inventory

Why create CSFO? No complete Coreidae catalogue for over 100 years Little modern data on African or Asian taxa Prior to project almost no data online Extensive taxonomic card catalogue available (William Dolling) Lethierry & Severin (1894)

What is CSFO? Comprehensive online catalogue Uses Species File Software platform Contains highly structured taxonomic data Most content open access for people and machines

Why choose Species File? All work should be done in an online catalogue Three options in 2007/2008: 1.Bespoke solution 2.Scratchpads 3.Species File Software Species File had more suitable features and guaranteed support

What has been achieved so far? (July 2014) 5393 Names (3085 valid species – 2555 valid Coreidae species) 6232 Specimens* (2199 unique taxa) 2310 Images (742 unique taxa) Citations (2265 unique references) ~3000+ specimen images from 20+ collections to be verified and databased!

What can CSFO do?

Taxon Image Comparison

Maps

Search Ecological relationships Expert assignation Faunal lists Localities People Specimens Specimen depositories Statistics Taxa

Other Features Keys Machine services Tests & verification checks (50+)

Public Engagement & (Re)Usage

How many of you have used data from a generic online service/resource at work?

Does anyone use Coreoidea Species File? Since the last IHS Meeting (2010): ~30,000 sessions 13,700 unique users 528,000 page views Average session duration = 8:51 minutes

Who uses Coreoidea Species File ( )?

Usage by biodiversity aggregators

Lessons Learned

What worked well? Working digitally in a highly structured database (with validation) Having robust statistics (assessing progress/access) Recording data quality Simple & standardised imaging procedure Good literature access

What would I do differently? Additional planning and add overheads Decide initial scope of data and stick to it! (very tempting to expand) Agree and document procedures for consistency Discuss licensing, custodianship and post-project sustainability Get more collaborators, be more open

The Future

What is the future of CSFO? Continues to get updates on new taxa/papers (online only) (Type) specimen images still being added (slow process) No long-term (5+ years) planning Hosting platform has long-term support (10+ years) with eventual migration to Taxon Works (SF successor) Collaborators and contributors welcome!

As a community what should we be thinking about? The future is digital and a lack of authoritative and comprehensive lists of names hampers scientific progress – we need to do more Sustainability/ maintenance is still a big concern Further discussion on authorship and attribution – will CC0 work for us? BUT Digitisation of collections will make similar projects easier New technologies to assist digital work: crowdsourcing data and citizen science

Acknowledgements Original CSFO Team: Bill Dolling, Valérie Lemaître and Mick Webb CSFO Collaborators & Contributors: Tristan Bantock, Harry Brailovsky, Paul Brock, Holly Dawson, Elizabeth Livermore, Gerardo Mazzetta, Malin Nikunlassi, Rich Packauskas & the Species File Team. Financial Support: The project was funded by the Leverhulme Trust under a Research Project Grant. Additional support was provided by: the SYNTHESYS Project to visit NHMW (AT-TAF) and HNHM (HU-TAF) which is financed by European Community Research Infrastructure Action under the FP6 "Structuring the European Research Area" Programme; the Zoological Museum – University of Copenhagen to curate and examine the J.C. Fabricius type collection. All the curators, researchers and collection managers who hosted and assisted me! The International Heteropterists’ Society for enabling me to attend this meeting!