Types of Cellular Networks. Gene Regulatory Networks

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Presentation transcript:

Types of Cellular Networks

Gene Regulatory Networks

Gene Regulatory Network Basic Operations

Protein Signaling Networks

Protein Signaling Networks Basic Operations

Metabolic Networks

Some Characteristics NetworkSpeedPurpose‘Technology’ GeneSlow to medium Remodeling signaling and metabolic networks DNA binding to control expression ProteinMedium to fastSignal processingProtein covalent modification and sequestration MetabolicFastManufacturing, energy systems Enzymes, allosteric control

Software for Network Visualization Does not include ball-stick networks, eg cytoscape

Gene Regulatory Networks Biotapestry.org BioTapestry Cross-platform, Java, Open Source, SBML?, no simulation

Metabolic and Protein Networks JDesigner Windows, Delphi, open source SBML, Part of SBW

Gene Protein and Metabolic Networks TinkerCell tinkercell.com Cross-platform, Open source, C/C++, Qt, Python, SBML?

Metabolic and Protein Networks CellDesigner Cross-platform Works with SBW, Java, SBML

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