Using additivity and bliss analysis to categorize corrector-corrector interactions Tim Vortherms*, Anne-Sophie Wesse, Arlene Manelli*, Andrew Swensen*,

Slides:



Advertisements
Similar presentations
The Search for Synergism A Data Analytic Approach L. Wouters, J. Van Dun, L. Bijnens May 2003 Three Country Corner Royal Statistical Society.
Advertisements

Cystic Fibrosis Pathogens Activate Ca 2+ -dependent mitogen-activated Protein Kinase Signaling Pathways in Airway Epithelial Cells by Aubrey Osborne and.
Co-Transporters Na + /Glucose Symport Vibrio cholerae Prokaryote Water-bourne pathogen Produces Cholera Toxin.
Putting it all together: Finding the cystic fibrosis gene Cystic fibrosis (CF) is a genetic disorder that is relatively common in some ethnic groups A.
Cystic fibrosis CF. Cysticfibrosis Cystic fibrosis the most common autosomal recessive (AR) disorder among Caucasians chronic and progressive disease.
A Study of Cystic Fibrosis Using Web-Based Tools Anuradha Datta Murphy Graduate Student, Dept. of Molecular and Integrative Physiology, University of Illinois.
Cystic Fibrosis Casey Kriak Joe Scalora Seyi Akinsola January 27, 2010 Period 9-10.
9/7/2015Mahia Samaha Alkony1 Genetics By: Mrs. Mahdiah Samaha Alkony.
Essay marking scheme 0: No answer 2 : Fail. Very incomplete or very inaccurate answer, or answer indicating substantial and potentially dangerous misunderstanding.
Molecular Basis for Relationship between Genotype and Phenotype DNA RNA protein genotype function organism phenotype DNA sequence amino acid sequence transcription.
© Copyright 2015 Galapagos NV Poster available online at: Defects in CFTR that result in Cystic Fibrosis can be broadly categorized into three.
METHODS Introduction Conclusions  The novel potentiator GP-2 is highly efficacious towards enhancing CFTR function following translational RT of PTCs,
© Copyright 2015 Galapagos NV Safety, tolerability and pharmacokinetics of a novel CFTR potentiator GLPG1837 in healthy volunteers F.P. Vanhoutte 1, M-H.
CYSTIC FIBROSIS AND CELL COMMUNICATION. CFTR Cystic Fibrosis Transmembrane Conductance Regulator ( Or CFTR)  Is a transport protein for Chloride across.
POTENTIATORS: HOW DO THEY IMPACT THE FATE OF CFTR DURING BIOGENESIS? 1 Cellular Protein Chemistry, Faculty of Science, Utrecht University, Padualaan 8,
CCystic Fibrosis is an inherited chronic disease IIt affects the lungs and digestive system SSymptoms IIt clogs the lungs with phlegm and causes.
NCode TM miRNA Analysis Platform Identifies Differentially Expressed Novel miRNAs in Adenocarcinoma Using Clinical Human Samples Provided By BioServe.
Cause Symptom Treatment Problem Conclusion Questions.
Figure 5 ISOX and vorinostat partially restore splicing pattern in DM1 patient-derived fibroblasts. (A) ISOX and vorinostat partially rescue mis-splicing.
Genes Genomes and Personalized Medicine
6.3 – Manipulating genomes
Relationship between Genotype and Phenotype
Advances in Cystic Fibrosis 2017
Ivacaftor potentiation of multiple CFTR channels with gating mutations
Evaluation of a systems biology approach to identify pharmacological correctors of the mutant CFTR chloride channel  Emanuela Pesce, Giulia Gorrieri,
Entry Task: Educated Guess!
Effect of ivacaftor on CFTR forms with missense mutations associated with defects in protein processing or function  Fredrick Van Goor, Haihui Yu, Bill.
Evaluating Effects of CFTR Modulation in Cystic Fibrosis
Effect of VX-770 (Ivacaftor) and OAG on Ca2+ influx and CFTR activity in G551D and F508del-CFTR expressing cells  Laura Vachel, Caroline Norez, Frédéric.
Z. Kopeikin, Z. Yuksek, H.-Y. Yang, S.G. Bompadre 
The cystic fibrosis transmembrane conductance regulator: an intriguing protein with pleiotropic functions  Anne Vankeerberghen, Harry Cuppens, Jean-Jacques.
Volume 20, Issue 7, Pages (July 2013)
Rescue of misfolded recoded cystic fibrosis transmembrane conductance regulator (CFTR) channels. a) Representative Western blot obtained from HEK293 cells.
Journal of Cystic Fibrosis
Therapeutic benefit observed with the CFTR potentiator, ivacaftor, in a CF patient homozygous for the W1282X CFTR nonsense mutation  Venkateshwar Mutyam,
Collapsing the Proton Motive Force to Identify Synergistic Combinations against Staphylococcus aureus  Maya A. Farha, Chris P. Verschoor, Dawn Bowdish,
Mutations Section 6.2.
Volume 137, Issue 3, Pages (September 2009)
Volume 18, Issue 8, Pages (February 2017)
Molecular Therapy - Nucleic Acids
Volume 116, Issue 6, Pages (June 1999)
Curcumin and genistein additively potentiate G551D-CFTR
Ibuprofen rescues mutant cystic fibrosis transmembrane conductance regulator trafficking  Graeme W. Carlile, Renaud Robert, Julie Goepp, Elizabeth Matthes,
Function of recoded cystic fibrosis transmembrane conductance regulator (CFTR) channels. a) Representative recordings obtained from HEK293 cells expressing.
Maturation of recoded cystic fibrosis transmembrane conductance regulator (CFTR) channels. a) Representative Western blot obtained from HEK293 cells expressing.
Bronchial epithelial cell lines and primary nasal epithelial cells from cystic fibrosis respond differently to cigarette smoke exposure  Mark Thomas Shaw.
Johanna F. Dekkers, Peter Van Mourik, Annelotte M
Volume 13, Issue 6, Pages (December 2013)
Function, pharmacological correction and maturation of new Indian CFTR gene mutations  Himanshu Sharma, Mathilde Jollivet Souchet, Isabelle Callebaut,
Covering the Cover Gastroenterology
Addressing Treatment Challenges in Cystic Fibrosis
Poster available online at:
Combination potentiator (‘co-potentiator’) therapy for CF caused by CFTR mutants, including N1303K, that are poorly responsive to single potentiators 
SUMO-2 Orchestrates Chromatin Modifiers in Response to DNA Damage
Galapagos potentiator and correctors
Volume 12, Issue 9, Pages (September 2015)
Validation of High-Resolution DNA Melting Analysis for Mutation Scanning of the Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) Gene  Marie-Pierre.
Molecular Therapy - Methods & Clinical Development
SUMO-2 Orchestrates Chromatin Modifiers in Response to DNA Damage
R. Dekkers, L. A. W. Vijftigschild, A. M. Vonk, E. Kruisselbrink, K. M
Volume 14, Issue 4, Pages (February 2016)
Volume 147, Issue 2, Pages (October 2011)
Molecular Therapy - Nucleic Acids
KCNE1 Binds to the KCNQ1 Pore to Regulate Potassium Channel Activity
Volume 18, Issue 2, Pages (February 2011)
Volume 4, Issue 1, Pages (July 2013)
Volume 9, Issue 4, Pages (October 2017)
Mutations in the CFTR gene that lead to defective Cl– and other ion transport through CFTR protein channels are the underlying defect of CF CFTR gene mutations.
Ivacaftor restores G551D-cystic fibrosis transmembrane conductance regulator (CFTR) function in human bronchial epithelial (HBE) primary cell cultures.
Correlation of sweat chloride levels with cystic fibrosis transmembrane conductance regulator (CFTR) protein expression and function. Correlation of sweat.
Presentation transcript:

Using additivity and bliss analysis to categorize corrector-corrector interactions Tim Vortherms*, Anne-Sophie Wesse, Arlene Manelli*, Andrew Swensen*, Ashvani Singh*, Gert de Wilde, Bertrand Heckmann, Steven van der Plas, Thierry Christophe, Katja Conrath, Xueqing Wang*, Chris Tse* Galapagos NV, Generaal De Wittelaan L11A3, 2800 Mechelen, Belgium. * AbbVie, 1 North Waukegan Road, North Chicago, IL 60064, US. 62 Placeholder for a QR code. Use if applicable. To view an electronic version of this poster, scan QR code or visit To obtain a QR code reader, go to your device app store and search for “QR code reader.” Corrector combination models ABAB Additivity Model Bliss Model C = A + B – (A*B)C = A + B Figure 6. Additivity model predicts the combined response (C) is equal to the sum of the individual correctors A and B alone. The Bliss model predicts the combined response (C) is equivalent to the sum of probabilities for correctors A and B alone. This model is based on the evaluation of the response of the compound mixture compared to the effect of each compound tested individually using this formula: Additivity index = Observed response (mixture) – Expected response (Cmpd A + Cmpd B) Additivity index can be visualized with 3-D surface plots Additive Synergistic Non Additive Cmpd A Cmpd B Cmpd C Cmpd B Cmpd D Cmpd A This model is based on the evaluation of the response of the compound mixture compared to the effect of each compound tested individually using this formula: Bliss index = Observed response (mixture) – Expected response (Cmpd A + Cmpd B – (Cmpd A x Cmpd B)) Bliss index can be visualized with 3-D surface plots Additivity Model Bliss Model Figure 7. 3-D surface plots of three representative profiles of corrector-corrector interactions using the additivity index. The surface graphs were categorized using the additivity index thresholds where > 0.2 is synergistic, 0.15 to is additive and < is non-additive. Additive Cmpd A Cmpd B Cmpd C Cmpd B Synergistic Non Additive Cmpd D Cmpd A Corrector combinations in primary HBE cells Cell Surface Expression Assays Two cell based assays were used to identify novel correctors that increase the cell surface expression of CFTR F508del. Introduction Figure 5. Three representative profiles of dose response curves generated from the combination matrix cell surface expression (CSE) assay. CSE data were normalized as a percentage of control response using the formula: (Value - Ave neg control)/(Ave pos control - Ave neg control)*100. These data were represented as a family of dose response curves for the indicated compound in the absence or presence of a second corrector. The activity of the second corrector is shown in the bar graph as the mean +/- SEM. Figure 4. Matrix of dose-response curves Cell Surface Corrector Combination Assay Representative Dose Response Curves Conclusions Potentiator Corrector Cystic fibrosis (CF) is an autosomal recessive disease that affects nearly 75,000 people worldwide. CF is caused by mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) protein that results in decreased maturation and function of CFTR, as well as, decreased surface stability and increased proteosomal degradation (Figure 1). To address these underlying causes of cystic fibrosis, two biomolecular activities are required, namely correctors to increase CFTR expression at the cell surface, and potentiators to allow the effective opening of the CFTR channel. Combined, these activities markedly increase CFTR function yielding improved hydration of the lung surface and subsequent restoration of mucociliary clearance. We are developing series of compounds capable of performing both these activities individually, and we report here the identification of novel correctors and their classification based on their mode of action. To this end, a cell surface expression assay was used to better understand the interaction between different corrector series. Using a matrix combination of different correctors and subsequently applying an additivity model, the corrector series interactions were categorized as synergistic, additive or non-additive. Figure 2. CFTR F508del – HRP in CFBE41o-Figure 3. CFTR F508del – Prolink™ in U2OS These two cellular systems were utilized to screen chemical libraries and identify compounds effective in restoration of CFTR F508del surface expression. These cell based assays utilize different moieties to tag the CFTR protein and allow for chemiluminescent detection of cell surface expression. In the first system, CFBe41o- cells were transduced with CFTR F508del that was fused to the horseradish peroxidase enzyme (CFTR F508del-HRP; Phuan, PW, et.al., (2014) Mol Pharmacol 86: 42-51) and the second system utilized the U2OS osteosarcoma cell line stably expressing Prolink™- tagged CFTR F508del that is activated based on the complementation platform designed by DiscoveRx ( catalog #: C3). Figure 1. Schematic of CFTR F508del defects Figure 9. Corrector combination functional activity in primary human bronchial epithelial (HBE) cells from F508del homozygous CF patients. The equivalent current (Ieq) traces shown above were measured in a 24-well TECC system and represents CFTR-mediated current following activation with forskolin (Fsk) and CFTR potentiator as indicated. Quantification of the TECC data is shown in the cognate bar graphs and represents that AUC (Fsk + potentiator) for the indicated treatment condition. Cmpd A, C are representative of corrector combinations that exhibit synergistic interactions in the CSE assay. Cmpd E is from the same chemical series as Cmpd C. Using this additivity model, newly identified chemical series could be characterized based on corrector-corrector interactions being additive/synergistic to each other and series correcting the cell surface expression of CFTR F508del in a non-additive manner. The model permitted rapid analysis of corrector combination effects and lead to identification of series that exhibit positive interactions in the presence of other corrector series. Translation of the positive corrector-corrector interactions was confirmed in primary CF epithelial cells providing the necessary support to further develop the series. Together, this has allowed us to focus our efforts on a targeted set of chemical series for further development. Figure 8. 3-D surface plots of three representative profiles of corrector-corrector interactions using the Bliss index. Note that the Bliss model may overestimate synergism if the compounds do not function in a mutually exclusive manner (eg., the difference between additivity and Bliss models for Cmpd A, D). DiscoveRxG. Lukacs