Affymetrix microarray analysis by using Cmap By NFU Biology Algorithm lab.

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Presentation transcript:

Affymetrix microarray analysis by using Cmap By NFU Biology Algorithm lab

What is Connectivity Map The Connectivity Map is a collection of genome-wide transcriptional expression data from cultured human cells treated with bioactive small molecules and simple pattern- matching algorithms. The discovery of functional connections between drugs, genes and diseases through the transitory feature of common gene- expression changes.

DEMO Step 1: Register as a new user.

DEMO(Cont) Step 2: Click the quick query

DEMO(Cont) Step 3 : upload the up tag and down tag file The tag file type has been Affymetrix microarray id and Change the file extension to “.grp”

Result Step 4: Click view results now.

Result(cont) Download result form here Drug nameDrug name and cell with cancer type Cancer type

Producer by National Formosa University Biology Algorithm lab Thanks For Watching