Rubber Hits the Road: How RDF benefits NEMO

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Presentation transcript:

Rubber Hits the Road: How RDF benefits NEMO Paea LePendu Stanford Center for Biomedical Informatics Research National Center for Biomedical Ontology (NCBO) Stanford University February 26, 2010 NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

Linked Open Data (http://linkeddata.org/) BioPortal NIF NEMO NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

Web of Knowledge (http://www. iskouk NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

Web of Knowledge (http://www. iskouk NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

Who is Eric Miller. Resource Description Framework (RDF) (http://en NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

Annotation at NCBO Resource Index Data is a publication or article PubMed, PubChem, ClinicalTrials, Gene Expression Omnibus, DrugBank, etc. Data is a publication or article Resource is a supplier of data Index associates data to ontology terms 20 resources (going on 100) Over 5 BILLION annotations! NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

Annotation Tagged Datasets Search & Retrieval Mining: Co-occurrences Cross-correlations Frequent items Tag clouds Minimal inference P100 N100 LOCC ROCC NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

Deep Annotation Tagged records within datasets NEMO is novel! Rich semantics Detailed queries (SPARQL) Aggregations Fine-grained analysis NEMO is novel! NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

NEMO Annotation Task Force (http://nemo. nic. uoregon Key Personnel: Haishan Liu, Bob Frank, Jason Sydes Gwen Frishkoff & Dejing Dou Goals (3 phases): Prototyping Annotations Finessing Annotations and Ontology Mappings Databasing the Annotations (RDF) NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.

Thank you. Questions? NEMO All-hands Meeting. Atlanta, GA. Feb. 26-8, 2010.