Anand Kesavaraju Department of Bioengineering, University of California, Berkeley BRITE REU, University of California, Riverside.

Slides:



Advertisements
Similar presentations
Aero-Hydrodynamic Characteristics
Advertisements

Mammalian Cell Culture. What is cell culture, exactly?  Cells, previously growing in a human or animal modified to grow in plastic or glass In the body.
Introduction This study deals with the effects of cholesterol on human embryonic kidney (HEK293) cells’ plasma membrane mechanics using an optical tweezers.
Detection of Harmful Algal Blooms Matthew Barboza, Supervising Professor Dr. Sungyong Jung Summer REU National Science Foundation AMIC PHOTODIODE  For.
Single Molecule Studies of DNA Mechanics with Optical Tweezers Mustafa Yorulmaz Koç University, Material Science and Engineering.
صدق الله العظيم الاسراء اية 58. By Dr. Abdel Aziz M. Hussein Lecturer of Medical Physiology.
Two dimensional elasticity mapping of partially cross-linked rabbit corneas using optical coherence elastography Jiasong Li 1, Manmohan Singh 1, Srilatha.
Optical Tweezers F scatt F grad 1. Velocity autocorrelation function from the Langevin model kinetic property property of equilibrium fluctuations For.
Mechanical properties of DNA under twisting Why important – biology: curved/bent DNA important in packing into nuclei, into viruses, in regulation of transcription,
TEMPLATE DESIGN © Eliminating non-specific interactions for accurate single- molecule force measurements with magnetic.
Acknowledgements A special thanks to: The Anvari Lab Jun Wang Instrumentation and Experimental Methods Culturing Methods H460: Cells are grown in RPMI.
A Biomechanical Comparison of Cancerous and Normal Cell Plasma Membranes Olivia Beane Syracuse University BRITE 2009.
Supplemental. Supplemental Figure 1. iPSC-EC expression and function. (A) Low density lipoprotein (LDL) uptake as performed using standard assay technique.
Sensors used in EFI (Electronic Fuel Injection)
Using Optical Tweezers as a Tool in Undergraduate Labs. Paul Ingram, Ido Braslavsky and David F. J. Tees Dept of Physics and Astronomy, Ohio University,
An Introductory Information about Optical Tweezers Mustafa Yorulmaz Koç University, Material Science and Engineering.
Announcements HW: Due Tuesday Oct 27 th. Start looking at an article to do your write-up on. Best article is from Nature, Science, Cell. (though can.
Islamic University _Gaza Faculty of science Department of Biotechnology By: Mahmoud W. El-Hindi 2013_
Design of Magnetic Tweezers
Viscous Flow Around Metal Spheres
The Effects of Glutamine Concentration on the Development of B16 Melanoma Yi Wang Advisor: Dr. Spilatro Introduction Melanoma, widely referred to as the.
Biology 212 Anatomy & Physiology I Dr. Thompson Fluid Balance.
Evaluating cell matrix stiffness with a multiphoton confocal microscope-optical tweezer setup Berney Peng, Carlo Alonzo, Lawrence Xia, Lucia Speroni, Irene.
Department of Tool and Materials Engineering Investigation of hot deformation characteristics of AISI 4340 steel using processing map.
Reporter : Chang-Fu Lain Professor: Cheng-Ho Chen Date : 6/11.
Optical tweezers and trap stiffness
Modeling Mechanical Stimulus. Intro Activity -(Outline Activity Once Determined) -(Questions, etc.)
Photocapacitance measurements on GaP alloys for high efficiency solar cells Dan Hampton and Tim Gfroerer, Davidson College, Davidson, NC Mark Wanlass,
Investigation of red blood cells aggregation in plasma and in proteins solutions by optical trapping Kisung Lee, A.V. Priezzhev, A.Yu. Maclygin, I.O. Obolenskii,
Sedimentation.
Small forces – Big results Abhijit Sarkar Assistant Professor Physics Department The Catholic University of America Washington D.C.
The Plasma Membrane Examples of different membrane proteins include  Ion channels  Carriers  Receptors.
Bubble Bouncing on Solid/Free Surfaces M.R. Brady, D.P. Telionis – Engineering Science and Mechanics P.P. Vlachos – Mechanical Engineering R.-H. Yoon,
REDUCING SCALE DEPOSITION BY PHYSICAL TREATMENT Sungmin Youn and Professor X. Si, Calvin College REDUCING SCALE DEPOSITION BY PHYSICAL TREATMENT Sungmin.
The goal of this communication is to show that (i) actomyosins with different calcium sensitivity interact with each other; (ii) the desensitized actomyosin.
Lin Wang Advisor: Sima Setayeshgar. Motivation: Information Processing in Biological Systems Chemical signaling cascade is the most fundamental information.
Cell Membrane Cell and Molecular Biology Advanced Higher Biology Unit One.
Magnetic Tweezers for Accurate Single-Molecule Force Measurements Noah Johnson BRITE 2009.
Tracking and Probing Single, Diffusing Molecules in Droplets Mark Arsenault, Peker Milas, Ben Gamari, Richard Buckman, Lori Goldner Biophysics Group MiniSymposium.
APLNR Silencing Attenuates Apoptosis in H9c2 cells Ellen Thompson, Asli F. Ceylan, Jun Ren, Nair Sreejayan University of Wyoming, School of Pharmacy, Division.
Cell membrane experiments Dept. of Experimental Orthopaedics and Biomechanics Bioengineering Reza Abedian (M.Sc.)
Titratable Acidities in Fruits Jacob Boroff a, Meredith Gray b, Dr. Faith Wyzgoski c and Dr. Tammy Siciliano c a Pharmaceutical Sciences Class of 2014,
Microbial Growth Growth in Batch Culture
Results Protein Removal is shown in the silver stained SDS-PAGE gel in Figure 3 below: F IGURE 3: A 10% SDS-PAGE gel after silver staining showing the.
Date of download: 6/27/2016 Copyright © 2016 SPIE. All rights reserved. Schematic of the experimental setup. (1) Nd:YVO4 laser. (2) Beam expander. (3)
CELL STRUCTURE & FUNCTION Sapling 3.3 CP Biology Paul VI Catholic High School.
Kinetics analysis of β-fructofuranosidase enzyme
Stiffening of Human Skin Fibroblasts with Age
Chapter 5 The Plasma Membrane.
Madoka Suzuki, Hideaki Fujita, Shin’ichi Ishiwata  Biophysical Journal 
Volume 107, Issue 4, Pages (August 2014)
Volume 105, Issue 5, Pages (September 2013)
Plasma Membrane Proteins
Volume 87, Issue 2, Pages (August 2004)
Dynamics of Membrane Nanotubulation and DNA Self-Assembly
Victor G. Romanenko, George H. Rothblat, Irena Levitan 
Mechanical Distortion of Single Actin Filaments Induced by External Force: Detection by Fluorescence Imaging  Togo Shimozawa, Shin'ichi Ishiwata  Biophysical.
Volume 96, Issue 9, Pages (May 2009)
Martin Clausen, Michael Koomey, Berenike Maier  Biophysical Journal 
Volume 97, Issue 4, Pages (August 2009)
Volume 88, Issue 6, Pages (June 2005)
Bacterial Thermotaxis by Speed Modulation
The Plasma Membrane and Homeostasis
Membranes -Composed of a phospholipid bilayer with embedded proteins
Igor Titushkin, Michael Cho  Biophysical Journal 
Volume 105, Issue 10, Pages (November 2013)
Madoka Suzuki, Hideaki Fujita, Shin’ichi Ishiwata  Biophysical Journal 
Volume 114, Issue 6, Pages (March 2018)
Iron concentration is higher in the serum of TPs than that of HVs
Laurdan Fluorescence Lifetime Discriminates Cholesterol Content from Changes in Fluidity in Living Cell Membranes  Ottavia Golfetto, Elizabeth Hinde,
Presentation transcript:

Anand Kesavaraju Department of Bioengineering, University of California, Berkeley BRITE REU, University of California, Riverside

Importance in cell membrane integrity and signaling. Regulates trans-membrane protein movement and plasma membrane-to- cytoskeleton attachment mechanics. Encyclopedia Britannica. 19 Aug 2009.

We are testing the effect of various concentrations of cholesterol on plasma membrane biomechanics by pulling nanotubes (tethers) from the membrane and calculating the tether force.

 We are using optical tweezers to study plasma membrane biomechanics.  Our setup consists of a Solid-state diode pump laser (λ = 1064 nm), various optical components (100x objective), and a piezoelectric stage (nm resolution for both {x,y,z} movement and velocity).

 The plasma membrane can be represented by a viscoelastic model.  The mechanics of the tethers are explained by a second-order Maxwellian spring – dash plot model of viscoelasticity.  The time-resolved effect on the tether force will be tested (more on this in the Methodology). Biophysical Journal 89(2005):

II. Methodology

 Trapping Force Calibration Materials: 1. DMEM Complete Media (Dulbecco’s Modified Eagle Medium with FBS and Penicillin/Strep.) Serum-enriched 2. Invitrogen™ Fluorescent Sulfate-Modified Beads (2 µm radius) 3. Piezoelectric stage 4. Power Meter  Calibration procedure: 1. Pass DMEM media through a trapped bead using a piezoelectric stage at various velocities (in µm/s) at various output power measurements (W) 2. Measure the velocity when the bead is dislodged from the trap. 3. Use Stokes’ Law to calculate the Escaping Force (pN) F d = 6πηRV Where F d = Viscous Drag Force, η = Viscosity, R = Radius of the Bead, and V = Escaping Velocity

Here, the diagram illustrates the bead becoming dislodged from the trap.

This calibration graph will be used to convert the diode current found in the tether pulling experiments into output power.

This calibration graph will be used to convert the output power into the tether force.

 HEK 293 cells should be passaged when the flask/plate is ~80% confluenced.  DMEM Complete Medium and trypsin should be heated in a water bath for ~30 minutes before use to prevent thermal shock for the cells.  To passage:  Old media should be removed from the flask/plate  Cells should be washed with FBS to remove all of the old media, then FBS should be removed  500 µL to 1 mL of trypsin should be added to the plate/flask, and should then be incubated for 1-2 minutes  Clusters of cells should be broken apart using both physical taps as well as rapid sucking in-and-out of 5 mL of new medium from the plate/flask.  Medium and trypsin in the plate/flask should be pipetted into another container, then distributed in different concentrations for different types of containers.

 3 mM and 5 mM concentrations.  Cholesterol depleted using M-β-CD (Methyl-Beta-Cyclodextrin)  Cholesterol enriched using water- soluble cholesterol obtained from Sigma-Aldrich™ in the form of cholesterol carrier – 51 mg cholesterol / 1 g of material.  The prepared media are vortexed for 3-4 minutes, followed by incubation for 30 minutes (37°C at 5% CO 2 ) before experimentation.

Step 1 Step 2 Step 3 Step 4

III. Results

Very clear correlation: As cholesterol is depleted, the tether force increases, and as cholesterol is enriched, the tether force decreases. The means are also statistically significantly different.

Still somewhat linear, but less correlated

No clear correlation visible.

IV. Conclusions

 The tether forces increase as the cholesterol is depleted, and vice versa.  The order of tether forces is: Cholesterol-Depleted > Untreated > Cholesterol-Enriched  Statistically significant results  Also, the higher the concentration, the stronger the effect in either direction is – the elastic regime becomes more dominant as concentration increases.

 With no delay, the elastic regime more accurately portrays the peak tether forces.  As the viscous regime takes over, the tether forces are much lower, and are much less correlated.  This means that the viscous component of force is more dominant over time.

 Testing different tether pulling velocities.  Dynamic Force measurement.  Quantifying amount of cholesterol present.

VI. Acknowledgements

 N. Khatibzadeh  Dr. Sharad Gupta  O.S. Beane  Professor B. Anvari  Anvari Lab  J. Wang  National Science Foundation Thanking:

Thanks for your time.