Introduction Our work is aimed at making hybrid myoglobins to use in photochemical studies of catalysis by heme proteins. Although myoglobin does not.

Slides:



Advertisements
Similar presentations
Uv spectroscopy.
Advertisements

Infrared Spectroscopy A.Why are we doing this experiment? 1)Infrared spectra tell us only a limited amount about a transition metal complex 2)In very simple.
1 Rate Analysis of Oxygen Dissociation from Native and Oxy-Cobalt Myoglobin Advanced Inorganic Chemistry, Johns Hopkins University 3003 North Charles Street,
Created by Karen McFarlane Holman, Willamette University and posted on VIPEr ( on June 27, Copyright.
Raman Spectroscopy A) Introduction IR Raman
Chlorophyll biosynthesis. In the first phase of chlorophyll biosynthesis: The amino acid glutamic acid is converted to 5- aminolevulinic acid (ALA). This.
Using Fluorescence Spectroscopy to Determine the Relative Chlorophyll Concentrations of Vegetables Jane Kim & Rebecca Long Ch251B – Instrumental Analysis.
UV / visible Spectroscopy
Dr. Nasim.  Hemeproteins are a group of specialized proteins that contain heme as a tightly bound prosthetic group  hemoglobin and myoglobin, the two.
Ultraviolet and Visible Spectroscopy Chemical Ideas 6.8.
Increasing life span of polymer solar cell. Nagilthes Muthu Chem 4101 Fall 2011.
Light Harvesting in Photosynthesis Gabriela Schlau-Cohen Fleming Group.
Circular Dichroism Part I. Introduction.
Lecture 5 An Introduction to Spectroscopy Electromagnetic radiation, electromagnetic wave Emission, absorption, fluorescence.
Spectroscopy: UV spectra MiniQuiz Conclusion Unknown 2/ Introduction Unknown 3: Nitro compounds. Inert Compounds. Today:
Advanced Higher Chemistry Unit 1 Spectroscopy. Spectroscopy  Spectroscopy is used to give information regarding the structure of atoms or molecules.
Lecture 5. UV-VIS Spectroscopy. Ultraviolet and Visible Absorption Spectroscopy When matter absorbs electromagnetic radiation in the domain ranging from.
Lecture 7 Part II Tissue optical properties (Absorption) Acknowledgement Slides on absorption spectroscopy based on Lecture prepared by Dr. Nimmi Ramanujam,
Time out—states and transitions Spectroscopy—transitions between energy states of a molecule excited by absorption or emission of a photon h =  E = E.
Copyright © 2005 SRI International How Sunscreens Block The Absorption of UV Light.
PROBING PROTEIN STRUCTURE AND INTERACTIONS USING FUNCTIONALIZED NAPHTHALIMIDES L. Kelly, B. Abraham, M. Mullan Department of Chemistry and Biochemistry,
DETERMINATION OF THE RATE OF AN ELECTRON TRANSFER REACTION BY FLUORESCENCE SPECTROSCOPY Presenter:Sandor Kadar, Ph.D.
Structure Determination by Spectroscopy Mass spectroscopy Ultraviolet-visible spectroscopy Infrared spectroscopy Nuclear magnetic resonance spectroscopy.
TOPIC D: SPECTROMETRY AND SPECTROSCOPY. Mass spectrometry is used to detect isotopes. mass spectrometer uses an ionizing beam of electrons to analyze.
HEME SYNTHESIS DR AMINA TARIQ BIOCHEMISTRY. HEME PROTEINS These are a group of specialized proteins that contain heme and globin. Heme is the prosthetic.
Characterization of 3-OHFT 3-hydroxyflavothione was characterized by 1 H NMR, UV-Visible spectroscopy, LCMS and HPLC. This synthetic approach has resulted.
What Can Spectroscopy Tell Us?. Atom or Molecular Fingerprints Every atom or molecule exists in its own unique energy state. This energy state is dependent.
Chem. 31 – 4/1 Lecture.
Toner-print removal from paper by long and ultrashort pulsed lasers by David Ricardo Leal-Ayala, J. M. Allwood, M. Schmidt, and I. Alexeev Proceedings.
States and transitions
Abstract Solvatochromism and IR Characteristics of Tricyanovinyl Substituted Molecules Sarah Hammond, Rebecca Nagurney and Kyrra Struble Faculty Advisor:
Nitrogen-Doped Carbon
Single-Chain Nanoparticles from Sequenced Polyolefins Acknowledgments Thank you to Dr. Erik Berda and the Berda research group for allowing me to join.
© 2014 Pearson Education, Inc. Mass Spectrometry, Infrared Spectroscopy, and Ultraviolet/Visible Spectroscopy Paula Yurkanis Bruice University of California,
Heterometallic Carbonyl Cluster Precursors Heterometallic molecular cluster precursor - mediate transport and growth of nanoscale bimetallic particles.
SPECTROPHOTOMETRY. Spectrophotometry Determines concentration of a substance in solution –Measures light absorbed by solution at a specific wavelength.
Zinc Porphyrin Chromophores A qualitative introduction…
Blood is red because of the iron in hemoglobin.
Ch 10 Pages ; Lecture 24 – Introduction to Spectroscopy.
California State University, Monterey Bay CHEM312
Enzyme Why Are Enzymes So Important? Why are we devoting two whole lecture topic to a enzyme? Nearly all chemical reactions in biological cells need.
Photosynthesis Since only absorbed light can excite molecules and thus deliver its energy, so a photosynthetic pigment can act as absorbers of visible.
6 th World Congress on Biotechnology Leaves extract of Damdei, Lamka for the synthesis of mixed oxide of Zn nanoparticles: Truly biogenic method Presented.
The National Centre for Sensor Research Density functional theory investigation of ruthenium polypyridyl complexes incorporating 1,2,4-triazole Introduction.
Netherlands Organisation for Scientific Research High resolution X-ray spectroscopy of the Interstellar Medium (ISM) C. Pinto (SRON), J. S. Kaastra (SRON),
Myoglobin and Hemoglobin
Transient Absorption (Courtesy of Ken Hanson, Florida University): The technique applied to molecular dynamics Source hn Sample Detector.
Fabrication of Hybrid Solar Cells using ZnS Nanoparticles
Synthesis and Characterization of Porphyrin Nanoparticles to model Heme Protein Iron Coordination Graham Beaton , Samuel Pazicni
M. Sidheswaran, Z. Zhang, L. L. Tavlarides, J. Zhang, E. Khalifa
Transient Absorption (Courtesy of Kenneth Hanson, Florida University): The technique applied to molecular dynamics Source hn Sample Detector.
Synthesis and Characterization of ZnO-CdS Core-Shell Nanohybrids by Thermal Decomposition Method and Studies on Their Charge Transfer Characteristics Rama.
Dr.Sunita Adhikari (Nee Pramanik)
Spectroscopy Chem honors.
UV-VISIBLE SPECTROSCOPY Dr. R. P. Chavan Head, Department of Chemistry
Synthesis and Characterization of Porphyrin Nanoparticles to model Heme Protein Iron Coordination Graham Beaton , Samuel Pazicni
Data and Interpretation 4NaHSO4+5NaClO24ClO2+2H2O+4Na2SO4 (2)
Raman Spectroscopy A) Introduction IR Raman
Lecture 8: Volume Interactions
Sarah Lachapelle, Brian Patenaude, Samuel Pazicni
Controlled Synthesis of Single-chain Nanoparticles Under Various Atom Transfer Radical Coupling Conditions Courtney M. Leo, Ashley Hanlon, Elizabeth Bright,
Spectroscopy Uses emission and absorption of light by electrons moving between ground and excited state configuration, hence electronic configuration.
Lecture 8: Volume Interactions
Oxidative Protein Folding Is Driven by the Electron Transport System
WOODWARD-FEISER RULE It is used for calculating the absorption maxima
A SEMINAR ON Ultraviolet-Visible Spectroscopy
Titanium Dioxide Sensitized with Porphyrin Dye as a Photocatalyst for the Degradation of Water Pollutants Kevin Reyes, A.S. & Ivana Jovanovic, Ph.D. Department.
Biochemical and enzymatic characterization of YfeX.
Raman Spectroscopy A) Introduction IR Raman
Presentation transcript:

Introduction Our work is aimed at making hybrid myoglobins to use in photochemical studies of catalysis by heme proteins. Although myoglobin does not perform enzymatic functions in vivo, catalytically active analogues can be synthesized via the modification of the heme group (porphyrin) with a photoactive ruthenium bpy pendant arm. Reconstitution of these into apomyoglobin serves as a model for the catalytically active heme proteins. Mb active site Myoglobin

Synthesis of Bpy Pendant Arm Using this method, we can systematically vary the length and composition of the pendant arm. Synthesis of Protoporphyrin IX Derivative This protects one proprionate which will be nessasary to help stabilize our reconstituted protein.

The Amide Coupling Reaction Using UV-visible spectroscopy, we can determine when the C 7 PP or RuC 7 PP has been synthesized Wavelength (nm) Absorbance RuC 7 PP C 7 PP 400 nm 288 nm For the C 7 PP, there should be a 1 to 5 ratio between the peaks at 288 and 400 nm. The peak at 288 nm corresponds to bipyridine, and the one at 400 nm represents porphyrin. The spectrum of RuC 7 PP will have an increase for the 288 nm peak, increasing the aforementioned ratio to 3 to 5, as seen.

Metallation of Heme Cofactor Wavelength (nm) Absorbanc e RuC 7 FePP 400 nm 288 nm A UV-visible spectrum was taken to verify the incorporation of iron into the porphyrin of RuC 7 PP. On the spectrum to the left, it can be seen that there are only two Q bands. This is diagnostic of the metallated porphyrin. The two Q bands are peaks at 550 and 650 nm. Unmetallated porphyrins, eg. RuC 7 PP and C 7 PP, have four Q bands. 550 nm 650 nm

Preparation of Apomyoglobin The synthesis of apomyoglobin occurs in a three step process: 1. Extraction of Native Heme 2. Dialysis 3. Lyophilization Myoglobin Apomyoglobin 4oC4oC The reconstitution of the altered heme is done by mixing it with the apoprotein, and purifying the reformed holoenzyme by chromatography

Molecular Model of Hybrid Mb Molecular Model of RuC 7 FePP myoglobin

Wavelength (nm) RuC7Mb Mb Ru(bpy) 3 2+ ca. 4 uM Visible spectra of the hybrid Myoglobin When reconstituted into apomyoglobin, the UV-visible spectrum resembles what one would expect from a coupling of Ru(bpy) 3 2+ and Fe III myoglobin. The soret shifts from 400 nm to 409 nm when reconstituted into protein. Characterization of the hybrid by UV Spectroscopy

LASERBeamsplitter sample  OD Time Termination Nanosecond Transient Absorption Spectroscopy Monochromator Probe Light

Photoinduced nanosecond transient absorption Using nanosecond transient absorption measurements of the heme soret bands in the hybrid Mb we can follow the fast electron transfer between Rubpy and the FeMb. The transient traces illustrate the back electron transfer, k bet, regenerating the Fe III /Ru 2+ state is 2 x 10 7 sec -1 h v k f et Myoglobin Fe III Ru 2+ (byp) 3 k - b et Time (us) Fe III 410 nm Fe II 430 nm

Future Work During the next year we will attempt to reconstitute the RuC 7 FePP heme cofactor into CcP. In myoglobin the active site is located on the edge of the protein whereas in CcP one of the propionate groups is blocked and the other is recessed from the periphery of the protein. Due to the topographic differences in the active sites, it is probable that we will need to alter the length and characteristics of the pendant arm in order for successful reconstitution. Other Possible Pendant Groups: -Re(bpy)(CO)3L(L= Cl-, Br-, pyridine) -Methyl viologen trp 191 trp 51 his 175 his 52 CcP Active Site

Acknowledgments Farmer Group Greg Qushair David Khandabi Phuong Do