Geospatial web services applied to Biodiversity Modelling Karla Donato Fook Advisors: Dr. Antônio Miguel V. Monteiro Dr. Gilberto Câmara Collaboration:

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Presentation transcript:

Geospatial web services applied to Biodiversity Modelling Karla Donato Fook Advisors: Dr. Antônio Miguel V. Monteiro Dr. Gilberto Câmara Collaboration: Dr. Silvana Amaral

Biodiversity

Species Distribution Modelling Experiment

Environmental recovery Contaminated area – before and after recovery work in 2001 Companhia Mineira de Metais (CMM) Três Marias-MG Source: controlPanel/materia/view/2419

Species conservation Source: Ibama Callicebus Coimbrai & Callicebus barbarabrownae

Impacts of climate change Source: /

Expansion of invasive species Source: USDA – United States Department of Agriculture /

Web Biodiversity Collaborative Modelling Services Pelargonium Cordifolium Callicebus Coimbrai & Callicebus barbarabrownae WBCMS Web Biodiversity Collaborative Modelling Services

General Objective Support collaboration in a Species Distribution Modelling Network: Sharing modelling

Provide answers What species are being modelled? Where does the data come from? What are the environmental variables? What are the algorithms? If I have a question, how can I look for similar results?

Key Concept Model Instance Species Distribution Modelling

Model Instance Species Model

Model Instance Species Model Metadata +

Model Instance Occurrence Environmental Variables Algorithm Model Instance Species Model generation Absence Metadata + Data

Model Instance Occurrence Environmental Variables Algorithm Model Instance Species Model generation Absence Metadata Data

Model Instance Occurrence Environmental Variables Algorithm Distribution Map Evaluation Index Model Instance Species Model generation Absence Reports Results Metadata Data

Model Instance Occurrence Environmental Variables Algorithm Distribution Map Evaluation Index Metadata + Model Instance Species Model generation Absence Reports Results Metadata Data

Model Instance Occurrence Environmental Variables Algorithm Distribution Map Evaluation Index Metadata + + Model Instance Species Model generation Absence Reports Results Metadata Data

WBCMS Architecture Web Client applications Researcher Model instances Biodiversity Collections WS_2WS_N Map Servers WS_1 Catalogue WBCMS ModelProcessorAccessProcessorCatalogueProcessor

XML, Result files Compose Storage Species distribution modelling Process Maps Result files Client Application Classifier WBCMS CatalogueProcessor Model instance Repository biodiversity data web services web services web services Metadata Publisher Legend: Application WBCMS component External WS

Catalogue Processor XML, Result files Compose Storage Species distribution modelling Process Maps Result files Client Application Classifier WBCMS CatalogueProcessor Model instance Repository biodiversity data web services web services web services Metadata Publisher Legend: Application WBCMS component External WS

Catalogue Processor XML, Result files Compose Storage Species distribution modelling Process Maps Result files Client Application Classifier WBCMS CatalogueProcessor Model instance Repository biodiversity data web services web services web services Metadata Publisher Legend: Application WBCMS component External WS

Catalogue Processor XML, Result files Compose Storage Species distribution modelling Process Maps Result files Client Application Classifier WBCMS CatalogueProcessor Model instance Repository biodiversity data web services web services web services Metadata Publisher Legend: Application WBCMS component External WS

Catalogue Processor XML, Result files Compose Storage Species distribution modelling Process Maps Result files Client Application Classifier WBCMS CatalogueProcessor Model instance Repository biodiversity data web services web services web services Metadata Publisher Legend: Application WBCMS component External WS

WBCMS Architecture Web Client applications Researcher Model instances Biodiversity Collections WS_2WS_N Map Servers WS_1 Catalogue WBCMS ModelProcessorAccessProcessorCatalogueProcessor

Access Processor Legend: Application WBCMS component External WS WBCMS Server Request Model instance Client Application Model instance Repository Uploaded result files WMS AccessProcessor Query WFSRetrieve

Access Processor Legend: Application WBCMS component External WS WBCMS Server Request Model instance Client Application Model instance Repository Uploaded result files WMS AccessProcessor Query WFSRetrieve

Access Processor Legend: Application WBCMS component External WS WBCMS Server Request Model instance Client Application Model instance Repository Uploaded result files WMS AccessProcessor Query WFSRetrieve

Access Processor Legend: Application WBCMS component External WS WBCMS Server Request Model instance Client Application Model instance Repository Uploaded result files WMS AccessProcessor Query WFSRetrieve

WBCMS Architecture Web Client applications Researcher Model instances Biodiversity Collections WS_2WS_N Map Servers WS_1 Catalogue WBCMS ModelProcessorAccessProcessorCatalogueProcessor

Model Processor Request Species distribution map Client Application Model instance Repository OpenModeller Web Service WBCMS Server ModelProcessor RunModel Legend: Application WBCMS component External WS

Model Processor Request Species distribution map Client Application Model instance Repository OpenModeller Web Service WBCMS Server ModelProcessor RunModel Legend: Application WBCMS component External WS

WBCMS Architecture Web Client applications Researcher Model instances Biodiversity Collections WS_2WS_N Map Servers WS_1 Catalogue WBCMS ModelProcessorAccessProcessorCatalogueProcessor

WBCMS Architecture Web Researcher Model instances Biodiversity Collections WS_2WS_N Map Servers WS_1 Catalogue WBCMS ModelProcessorAccessProcessorCatalogueProcessor Client Applications

WBCMS Prototype OpenModeller Project

Catalogue Client Application OpenModeller modelling result status msg Model Instances WBCMSWBCMS Model Instance Web Services Biodiversity Data Researcher

Access Client Application Model Instance Query Reaearcher WBCMSWBCMS Model Instances

Species Distribution Maps

Final Comments  The conceptual framework of web services supplies a base for development of collaborative environment for species distribution modelling  WBCMS architecture Allows sharing experiments in a species distribution network Enables researchers to perform new models based in previous ones Allows comparing results  Our experiments, have demonstrated the viability of the proposals and ideas

Final Comments  Future Work Model instances usage statistics Link to related publications Make WBCMS available

Lençóis Maranhenses Thanks !