SimITK/SimVTK: Model Driven Engineering for Medical Imaging 1.

Slides:



Advertisements
Similar presentations
Introduction to Java 2 Programming Lecture 10 API Review; Where Next.
Advertisements

Introduction to ASP.NET MVC
System Simulation made easy by. Multi-Physics System Simulator Electrical Electronics, power electronics, rotating machines, spice semiconductors… Mechanics.
CHAPTER 2 GC101 Program’s algorithm 1. COMMUNICATING WITH A COMPUTER  Programming languages bridge the gap between human thought processes and computer.
Yingcai Xiao Chapter 4 The Visualization Pipeline.
National Alliance for Medical Image Computing Anatomy of a plugin Common architecture for interactive and batch processing.
Using JavaServer Pages Harry R. Erwin, PhD CIT304/CSE301.
A DICOM Import Module for XIP Alex Shnayder Lafayette College Easton, PA Supervisor: Dr. Dave Channin We gratefully acknowledge the support of: Pat Mongkolwat,
FPGA BASED IMAGE PROCESSING Texas A&M University / Prairie View A&M University Over the past few decades, the improvements from machine language to objected.
SIMULINK Dr. Samir Al-Amer. SIMULINK SIMULINK is a power simulation program that comes with MATLAB Used to simulate wide range of dynamical systems To.
HossamTalaat - MATLAB Course - KSU - 21/1/24 1 IEEE Student Branch - College of Engineering - KSU Getting started with Simulink By Prof. Hossam Talaat.
CAP4730: Computational Structures in Computer Graphics Basic Graphics Hardware.
Simulink ® From Simulink® 7 Getting Started Guide.
JPEG Compression in Matlab
CASE Tools And Their Effect On Software Quality Peter Geddis – pxg07u.
2012 National BDPA Technology Conference Creating Rich Data Visualizations using the Google API Yolanda M. Davis Senior Software Engineer AdvancED August.
Getting Started with ITK in Python Language
DIVERSE Ben Trott Max Woollard 26 th October 2011.
Building a UI with Zen Pat McGibbon –Sales Engineer.
Development and Implementation of Teaching Aids to enhance the Understanding of Control Systems Dr Mahmoud Abdulwahed Prof Zoltan K Nagy and Dr Adam R.
Simulink ® Interface Course 13 Active-HDL Interfaces.
XIP: The eXtensible Imaging Platform Development Program Fred Prior, Ph.D. Mallinckrodt Institute of Radiology Washington University in St. Louis.
XIP™ – the eXtensible Imaging Platform A rapid application development and deployment platform Lawrence Tarbox, Ph.D. September, 2010.
Doug Smeltz Fort Hayes Arts/Academic H.S.
Simulink ® Interface Course 13 Active-HDL Interfaces.
An Introduction to Programming and Algorithms. Course Objectives A basic understanding of engineering problem solving process. A basic understanding of.
Data Management Console Synonym Editor
SimITK and SimVTK: ITK and VTK in Simulink DG Gobbi, P Mousavi, KM Li, J Xiang, A Campigotto, A LaPointe, G Fichtinger, P Abolmaesumi Medical Image Analysis.
Visualization Workshop David Bock Visualization Research Programmer National Center for Supercomputing Applications - NCSA University of Illinois at Urbana-Champaign.
M.S. Thesis Defense Jason Anderson Electrical and Computer Engineering Dept. Clemson University.
Ana-Elena Rugina (ASTRIUM Satellites) © EADS ASTRIUM. All rights reserved. September 2009 Astrium Activities around Gene-Auto in 2009.
Introduction to ArcGIS for Environmental Scientists Module 3 – GIS Analysis Model Builder.
NA-MIC National Alliance for Medical Image Computing Slicer and ITK Raul San Jose.
Automata Based Method for Domain Specific Languages Definition Ulyana Tikhonova PhD student at St. Petersburg State Politechnical University, supervised.
VAPoR: A Discovery Environment for Terascale Scientific Data Sets Alan Norton & John Clyne National Center for Atmospheric Research Scientific Computing.
NA-MIC National Alliance for Medical Image Computing Adding Orientation to itkImage.
SIMULINK-Tutorial 1 Class ECES-304 Presented by : Shubham Bhat.
QPE A Graphical Editor for Modeling using Queueing Petri Nets Christofer Dutz.
1 ParaView Future, vision, …. 2 ParaView Architecture.
Application model integration in the Virtual Test Bed Roger A. Dougal Dept of Electrical Engineering University of South Carolina Columbia, SC 29208
S-Functions in Simulink
Simulink by Dr. Amin Danial Asham. References  MATLAB Help  Telemark University College - Department of Electrical Engineering, Information Technology.
Formulas & Functions Formula – an algebraic expression that relates two or more real-life quantities.
Bill Hoffman, Jesus Caban, Brad Lowkamp, Dan Muller, Fabrice de Chaumont, Julien Michel, Harvey Cline, Gabe Hart, Ghassam Hamarech, John Galeotti, Raghu.
Change to scientific notation: A. B. C. 289,800, x x x
TA: Shreya Rawal.  A use case is a description of a system’s behavior as it responds to a request that originates from outside of that system (Usually.
 Problem Analysis  Coding  Debugging  Testing.
Automatic Lung Nodule Detection Using Deep Learning
IBM Rational Rhapsody Advanced Systems Training v7.5
WORKSHOP 1 CO-SIMULATION.
Fuzzy Logic Toolbox Analysis and Design.
Damped Forced Vibrations Analysis Using CAMP-G® and Simulink® Modeled Solutions to Problem (
Software for scientific calculations
SysML/FMI Etienne BROSSE
Lecture 3: Linear Regression (with One Variable)
Lecture 12 Linearity & Time-Invariance Convolution
Simulink Basics Reijo Vuohelainen
Multiplying and Dividing Powers
WPF AKEEL AHMED.
Graph Paper Programming
Python Lessons 9 & 10 Mr. Kalmes.
MATLAB/SIMULINK Professor Walter W. Olson
Function Notation “f of x” Input = x Output = f(x) = y.
Maths Unit 1 - Algebra Order of operations - BIDMAS Algebraic Notation
An algebraic expression that defines a function is a function rule.
Editing Instructions. Editing Instructions Exporting Instructions.
Distributive Property
Title of the Research Study
Software Architecture & Design
Lesson 3.3 Writing functions.
Presentation transcript:

SimITK/SimVTK: Model Driven Engineering for Medical Imaging 1

Simulink, Model Driven Engineering (MDE) in Matlab Interactive graphical environment Select, add blocks to blank “canvas”, inter-connect blocks to form a process model Written programming code abstracted away Replaced by equivalent visual model representation 2

SimITK/SimVTK, MDE for ITK & VTK MDE for ITK/VTK: Drag and drop approach to process development Accessible visual notation for ITK and VTK Instructional value MATLAB/Simulink offer many benefits: Use MATLAB’s Simulink visual environment Avoid reinventing the wheel Allow mix of MATLAB code and ITK/VTK 3

SimVTK Example 4

SimITK Example 5

6 System Overview

Templating 7

Virtual Block 8 Simulink ITK VirtualPort Conversion itkImage Update ITK Image Filter itkImage Conversion VirtualPort Parameter Variables Conversion Spacing & Origin Data Spacing & Origin Data Input Output Parameters

Goals Ultimate Goal – ITK and Simple ITK in Matlab and Simulink Synergy between the SimpleITK group and SimITK group Both communities aim to simplify usage of ITK Lead Engineering Time to complete ITK -> XML wrapper Possibly modify to do ITK -> JSON wrapping instead JSON is compact, better at expressing an API description Ways to Fund Engineering Time for: Wrapping of ITK in Simulink and Matlab Extending this work to SimpleITK in Matlab/Simulink 9