Unreliable research Trouble at the lab 1. Patrik Ahlberg Magnus Åhberg Syeda Rabab Naqvi Thawatachart Chulapakorn Group Members:

Slides:



Advertisements
Similar presentations
Final Year Projects Some tips
Advertisements

Useful tricks in studying reading papers doing research writing papers publishing papers English e-manuscripts.
What is Science Lesson 6. What is Science? (Lesson 6) Objectives: Explore and Explain.
Paper 1 Source Questions What is the message. What is the purpose
The Writing Process Communication Arts.
Doug Altman Centre for Statistics in Medicine, Oxford, UK
Marcia McNutt Editor-in-Chief Science Data Quality and Integrity: Some Considerations.
Doctoral Training Workshops Getting published and the reviewing process Steve Potter, Alex Borda-Rodriguez, Sue Oreszczyn and Julius Mugwagwa February.
Doctoral Training Workshops Getting published and the reviewing process Steve Potter and Sue Oreszczyn January 2015.
The Writing Process.
Estimation of Sample Size
STAR Basics.
2008Anton McLachlan Workshop on Publishing Scientific Papers Constructing a Paper The final step in a research project. We all stand on the shoulders of.
CSCD 555 Research Methods for Computer Science
Reading the Literature
Scientific method - 1 Scientific method is a body of techniques for investigating phenomena and acquiring new knowledge, as well as for correcting and.
Bio (“life”) + logy (“study of”) Scientific study of life (pg. 4)
Writing Technical Reports
1.1.3 Scientific Method & Experimentation Follow-Me – iQuiz.
Tips for writing well and getting your work published Madhukar Pai, MD, PhD McGill University, Montreal Editorial board member: Lancet Infect Dis PLoS.
Reliability Andy Jensen Sandy Cabadas.  Understanding Reliability and its issues can help one solve them in relatable areas of computing Thesis.
What’s in the news right now related to science???? Flesh eating bacteria.
Presentation of Findings, Communication and Utilization of Findings.
Chris Luszczek Biol2050 week 3 Lecture September 23, 2013.
Main issues Effect-size ratio Development of protocols and improvement of designs Research workforce and stakeholders Reproducibility practices and reward.
Ginny Smith Managing Editor: Planning and Urban Studies Taylor & Francis Ltd.
Software Engineering Experimentation Rules for Reviewing Papers Jeff Offutt See my editorials 17(3) and 17(4) in STVR
Consumer behavior studies1 CONSUMER BEHAVIOR STUDIES STATISTICAL ISSUES Ralph B. D’Agostino, Sr. Boston University Harvard Clinical Research Institute.
A A R H U S U N I V E R S I T Y Faculty of Agricultural Sciences (DJF), Department of Integrated Pest Management Scientific Publishing, Flakkebjerg, September.
Introduction to Statistics Harry R. Erwin, PhD School of Computing and Technology University of Sunderland.
Using the Scientific Method
Unit 1 Lesson 2 Scientific Investigations
Scientific Method for a controlled experiment. Observation Previous data Previous results Previous conclusions.
 Remember, it is important that you should not believe everything you read.  Moreover, you should be able to reject or accept information based on the.
1 Psych 5500/6500 The t Test for a Single Group Mean (Part 4): Power Fall, 2008.
Independent vs Dependent Variables PRESUMED CAUSE REFERRED TO AS INDEPENDENT VARIABLE (SMOKING). PRESUMED EFFECT IS DEPENDENT VARIABLE (LUNG CANCER). SEEK.
1 Ethical issues in clinical research Bernard Lo, M.D. January 25, 2007.
Where did plants and animals come from? How did I come to be?
Debugging Strategies from Software Carpentry. Agan's Rules Many people make debugging harder than it needs to be by: Using inadequate tools Not going.
Judging Tips for Junior & Senior Projects 2012 Scott Ferguson, Ph.D. Atlantic Turf & Ornamental Consulting.
통계적 추론 (Statistical Inference) 삼성생명과학연구소 통계지원팀 김선우 1.
LITERATURE REVIEW: THE WAY TO GET IDEA AND SUPPORT YOUR OPINION Ching-Chih Lee.
Managing my research degree John Kirby Graduate School Faculty of Medical Sciences.
Original Research Publication Moderator: Dr. Sai Kumar. P Members: 1.Dr.Sembulingam 2. Dr. Mathangi. D.C 3. Dr. Maruthi. K.N. 4. Dr. Priscilla Johnson.
Introduction to Science and its methods – PART 2 Fausto Giunchiglia Thanks to R.Brandtweiner Literature: Robert V. Smith. Graduate Research, 1998 Jeffrey.
CHAPTER 9 Testing a Claim
DESIGNING AN EXPERIMENT.  Scientific Inquiry – the process of gathering evidence about the natural world and giving explanations based on evidence. DESIGNING.
Scientific investigations.  Question/problem –What do you want to know  Hypothesis- logical prediction for the question or problem  Variables- Factors.
1 Running Experiments for Your Term Projects Dana S. Nau CMSC 722, AI Planning University of Maryland Lecture slides for Automated Planning: Theory and.
Approach to Research Papers Pardis Esmaeili, B.S. Valcour Lab Mentoring Toolbox Valcour Lab Mentoring Toolbox2015.
Ethics and Plagiarism AAHEP8 -- Amsterdam 2015 Erick Weinberg -- APS.
The following will be graded! do your best! Get out a pen and a piece of paper, follow expected format, entitled …
INTERVIEWING Learning to ask the right questions.
Chapter 1 Self Awareness: WHO AM I? Chapter 1 Self Awareness: WHO AM I? Personal Interest.
Ethics Jacob Bryan ECE 445 Lecture 4. Ethics and Morals  Individual and collective standards –I feel morally bound to volunteer in my community –I am.
Progression of New Drug: From Idea to Public Consumption Chris DeFarlo Writing in the HLTH Professions Unit 2 Prof. Edwards.
Replication & EthicsAnderson & KichkhaJanuary 2016 Replication = Ethics? Richard Anderson Areerat Kichkha Lindenwood University Replication & EthicsAnderson.
Pitfalls of your first paper Shu Cai Institute of Computing Technology, Chinese Academy of Sciences
Research methods revision The next couple of lessons will be focused on recapping and practicing exam questions on the following parts of the specification:
Scientific Utopia: I. Improving Scientific Communication Brian Nosek University of Virginia Center for Open Science.
Loughborough University
How does publication in psychological science work?
Outline Goals: Searching scientific journal articles
Reinventing Scholarly Communication by Separating Publication From Evaluation Brian Nosek University of Virginia -- Center for Open Science
Disrupting Scholarly Communication
Experimental Psychology PSY 433
Experimental Design and the Scientific Method
Causal identification through a cumulative body of research
Chapter 4 Summary.
Chapter 18: Submitting a paper
Presentation transcript:

Unreliable research Trouble at the lab 1

Patrik Ahlberg Magnus Åhberg Syeda Rabab Naqvi Thawatachart Chulapakorn Group Members:

Outline: Introduction Understanding Insignificance Not Even Wrong Blame the Ref Harder to Clone than you wish Making the Paymaster´s Care Personal Reflections 3

Introduction Irreproducibility is on rampage Self corrections are not working IRL “There is no cost to getting things wrong, The cost is not getting them published.” Brian Nosek, University of Virginia 4

Understanding Insignificance False Positives + False Negatives = Problem We are not using statistics Not possible with power of 0.8 5

Not even wrong Research is commonly not thought through or not well executed Examples: – The ”pentaquark” saga (experiment not properly blinded) – Risks with computer model ”tuning” – Longevity associated genetic variations due to inproper handling of research samples 6

Blame the ref Peer reviewers are not detecting errors – John Bohannon´s made-up paper was published in 157 out of 304 journals – Fiona Godlee yielded similar results when sending an 8-error paper to the 200 reviewers of BMJ Errors are explained by incompetence rather than fraud The replication mechanism for scientific self- correction is not functioning well 7

Harder to Clone than you wish : Replication is hard to meet our standard To find errors in the publications, we need to replicate the work of others, but process is not according to our wish. Replication Lack of interest by Journals and Academic Researchers 8

Lack of Interest  Journals thirsty of novelty, show little interest in it.  Academic researchers mostly spend time on work which is more likely to enhance their careers. Replication is Hard  Original methods and data required  Unpublished Research  Clinical trials are very costly to rerun  Software may be different during the replication  Failure of replication due to tacit knowledge  Expermenter’s regress 9

Finally, we would say that… Making the paymasters care SituationPaymastersResearcher Problem-Prefer pioneer -Deny failed result -Paper machine -Bias discussion -Blame the previous error Purpose-Emphasize replication as same as others -Don’t serious the failed result (Hard) -Develop technical and statistical skill -Honest result -Enforce standard (Journal) 10

Patriks work Unethical publishing cancels this problem – No reproducibility possible – Small feasibility tests The system has given up on the system – Seniors warning juniors – Reliability comes from people not publications 11

Own reflections The possibility to ”tune” computer models until the desired results appear relates to my own research It is easy to percieve patterns and get results that are expected and might not even exist Responsibility as a reviewer: – When do I accept a reviewer invitation? – Do I expect to find errors? What am I looking for as a reviewer? 12

Own Reflections If some one tries to repeat my experiment, he must have  Access to original methods and data  Awareness of simulation procedure  Similar samples for study 13

Related to my (future) research Replication – Same or not? Why? Scrutiny – Procedure – Measurement Bias discussion Raw data Log book!!! 14

15