LEHNINGER PRINCIPLES OF BIOCHEMISTRY Sixth Edition David L. Nelson and Michael M. Cox © 2013 W. H. Freeman and Company CHAPTER 8 Nucleotides and Nucleic.

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LEHNINGER PRINCIPLES OF BIOCHEMISTRY Sixth Edition David L. Nelson and Michael M. Cox © 2013 W. H. Freeman and Company CHAPTER 8 Nucleotides and Nucleic Acids

Cellular Processes DNA RNA (mRNA) Proteins LipidsCarbohydrates replication transcription translation

Structure of Nucleotides

Phosphodiester linkages in the covalent backbone of DNA and RNA

Hydrolysis of RNA under alkaline conditions

Absorption spectra of the common nucleotides

Hydrogen bonding between complementary DNA strands

Watson – Crick model for the structure of DNA

Certain DNA sequences adopt unusual structures

A single DNA strand with self complementary sequences can form a hairpin structure

Double stranded DNA with self complementary sequences can form a cruciform structure

Hoogsteen base pairs form in triplex DNA A single strand of DNA, typically a string of pyrimidines, hydrogen bonds in the major groove of a double-stranded DNA Red strand is in the major groove

Four DNA strands containing a high proportion of guanosines can form a G tetraplex

Cellular Processes DNA RNA (mRNA) Proteins LipidsCarbohydrates replication transcription translation

mRNA molecules can be monocistronic (containing one gene) or polycistronic (containing multiple genes) In eukaryotes most mRNAs are monocistronic In prokaryotes many mRNAs are polycistronic

Secondary structure of RNA

M1 RNA component of the enzyme Rnase P of E. coli

Reversible denaturation and annealing (renaturation) of DNA

When DNA is denatured the melting point is when half of the DNA is present as separated single strands The greater the G-C content, the higher the melting point (t m )

Electron micrograph showing partially denatured DNA Red arrows indicate regions of high A-T content, which denature first

Spontaneous loss of an exocyclic amino group is deamination Around 100 times per day in a cell

Nitrous acid (HNO 2 ) promotes deamination reactions

Hydrolysis of the bond between the base and the ribose creates an apurininc site in DNA Around 10,000 times per day in a cell

Pyrimidine dimers are induced by exposure to UV light

Nucleotides found in biomolecules