Www.opticalimaging.org Tutorial on Computational Optical Imaging University of Minnesota 19-23 September David J. Brady Duke University www.disp.duke.edu.

Slides:



Advertisements
Similar presentations
An Alternative Method of Extending Imaging Window of Fourier Domain – Optical Coherence Tomography by Using a Complex Conjugate Removal Technique Amine.
Advertisements

Lecture 11. Microscopy. Optical or light microscopy involves passing visible light transmitted through or reflected from the sample through a single or.
Understanding and Comparing Confocal Scanning Lasers to Optical Coherence Tomography for Optic Nerve Head Analysis (ONH) A presentation courtesy of Zeiss.
Fluorescence microscopy – Principle and practical consideration Hiro Ohkura.
Frequency Domain Optical Coherence Tomography (FDOCT) Joon S Kim IMSURE Summer Research Fellow At Beckman Laser Institute University of California at Irvine.
Chris A. Mack, Fundamental Principles of Optical Lithography, (c) Figure 3.1 Examples of typical aberrations of construction.
DIGESTIVE. ESOPHAGUS Stratified squamous epithelium Submucosa The muscularis externa Esophageal glands.
Confocal & Two-photon Microscopy. Contents 1.Two-Photon Microscopy : Basic principles and Architectures 2. Resolution and Contrast in Confocal and Two-Photon.
Optical Coherence Tomography Zhongping Chen, Ph.D. Optical imaging in turbid media Coherence and interferometry Optical coherence.
1 Swept Source Frequency Domain Optical Coherence Tomography Swept Source Frequency Domain Optical Coherence Tomography Anurag Gupta University of Rochester,
Imaging of flexural and torsional resonance modes of atomic force microscopy cantilevers using optical interferometry Michael Reinstaedtler, Ute Rabe,
1 Chapter 10 Diffraction March 9, 11 Fraunhofer diffraction: The single slit 10.1 Preliminary considerations Diffraction: The deviation of light from propagation.
Optical Coherence Tomography
Tutorial on Computational Optical Imaging University of Minnesota September David J. Brady Duke University
Tutorial on Computational Optical Imaging University of Minnesota September David J. Brady Duke University
Diaddddddd122223d Diagnosis of esophagial cancer (Artesh medical university) Dr Saidi.
Optical Microscopy Widefield Microscopy - Brightfield, Darkfield, DIC, Phase Contrast, Fluorescence … Total Internal Reflection (TIR and TIRF) Microscopy.
Photo-Thermal Coherent Confocal Microscope This work is supported in part by the Center for Subsurface Sensing and Imaging Systems, under the Engineering.
Confocal Reflectance Theta Line-Scanner for Intra-operative Imaging Confocal Reflectance Theta Line-Scanner for Intra-operative Imaging Peter J. Dwyer*,
Advanced Optics Lab at San Jose State University Ramen Bahuguna Department of Physics.
Effective lens aperture Deff
Tutorial on Computational Optical Imaging
David Sampson School of Electrical, Electronic, & Computer Engineering.
ECE 299 Holography and Coherent Imaging Lecture 1 Gabor Holography David J. Brady Duke University Lecture 1: Gabor Holographywww.disp.duke.edu/~dbrady/courses/holography.
October 21, 2005A.J. Devaney IMA Lecture1 Introduction to Wavefield Imaging and Inverse Scattering Anthony J. Devaney Department of Electrical and Computer.
Tutorial on Computational Optical Imaging University of Minnesota September David J. Brady Duke University
1 METHOD FOR DEFOCUS CORRECTION IN OPTICAL COHERENCE MICROSCOPY Dmitry Lyakin 1, Anton Sdobnov 2, Vladimir Ryabukho 2,1 1 Institute of Precision Mechanics.
Digestive Lab Part 1: Human Anatomy and Alimentary Histology.
FEMTOSECOND LASER FABRICATION OF MICRO/NANO-STRUCTURES FOR CHEMICAL SENSING AND DETECTION Student: Yukun Han MAE Department Faculty Advisors: Dr. Hai-Lung.
Tutorial on Computational Optical Imaging University of Minnesota September David J. Brady Duke University
1 2. Focusing Microscopy Object placed close to secondary source: => strong magnification The smaller the focus, the sharper the image! Spectroscopy, tomography.
Optical Coherence Tomography and its Application to Tissue Engineering Garret Bonnema College of Optical Sciences Industrial Affiliates February 28, 2007.
Sowmya Vasa, Umar Alqasemi, Aditya Bhargava. Objectives This paper aims in bringing out a novel light microscopy method called Focal Modulation Microscopy.
Colon Crypts of Lieberkuhn Mucosa. GI Tract MucosaSubmucosa Circular Portion of the Muscularis Externum Longitudinal Portion of the Muscularis Externum.
ECE 299 Holography and Coherent Imaging
Summarized by: Name: AGNES Purwidyantri Student ID No: D
3. Optical Coherence Tomography (OCT)
Optical Coherence Tomography (OCT) Gella Laxmi 2009PHXF013P.
Biophotonics and medical imaging
Tutorial on Computational Optical Imaging University of Minnesota September David J. Brady Duke University
Intro. Light Propagation in Free Space Helmholtz Equation 1-D Propagation Plane waves.
Lecture 31 General issues of spectroscopies. I. General issues of spectroscopies In this lecture, we have an overview of spectroscopies: Photon energies.
Tutorial on Computational Optical Imaging University of Minnesota September David J. Brady Duke University
Dr. Yingtian Pan’s Lab Unjoo Lee. About him  He is an associate Professor
Image Compression in Optical Coherence Tomography Biomedical Engineering, Tambov State Technical University, Russia K.E.S.Ghaleb, A.Yu.Potlov, S.N.Abdulkareem,
BMI2 SS07 – Class 5 “OCT” Slide 1 Biomedical Imaging 2 Class 5 – Optical Coherence Tomography (OCT) 02/20/07.
Casper Maheshwari advisors: Stephen Ulhorn & E. Duco Jansen Department of Biomedical Engineering Vanderbilt University
Histology Quiz: The Digestive System By Andrew W
For off-center points on screen, Fresnel zones on aperture are displaced …harder to “integrate” mentally. When white and black areas are equal, light at.
Advanced Confocal Microendoscopy Wibool Piyawattanametha, Ph.D.
Date of download: 6/2/2016 Copyright © 2016 American Medical Association. All rights reserved. From: Spectral Domain Optical Coherence Tomography: Ultra-high.
Optical Instruments II Instruments for Imaging the Retina.
Date of download: 6/23/2016 Copyright © 2016 SPIE. All rights reserved. (a) Photograph of the OCT imaging catheter inside a balloon that has an 18mm diam.
Date of download: 7/10/2016 Copyright © 2016 SPIE. All rights reserved. Illustration of the EBS phenomenon. EBS originates from the constructive interference.
1 Yi-Pai HuangAdvanced Display Optics Lab 學研計畫 --- 子計畫二 掃描式光學元件 --- 多電極液晶透鏡 Speaker: Yi-Pai Huang ( 黃乙白教授 ) Department of Photonics and Display Institute,
Graduate Institue of Electro-Optical Engineering Course Map
Optical Coherence Tomography
Photo acoustic tomography
Optical biopsy: A new frontier in endoscopic detection and diagnosis
Two-dimensional and 3-dimensional optical coherence tomographic imaging of the airway, lung, and pleura  N. Hanna, BS, D. Saltzman, MD, PhD, D. Mukai,
Optical biopsy: A new frontier in endoscopic detection and diagnosis
Chapter 10 Diffraction March 20 Fraunhofer diffraction: the single slit 10.1 Preliminary considerations Diffraction: The deviation of light from propagation.
Dual Mode Reflectance and Fluorescence Confocal Laser Scanning Microscopy for In Vivo Imaging Melanoma Progression in Murine Skin  Yanyun Li, Salvador.
Volume 56, Issue 6, Pages (December 2009)
Review calculation of Fresnel zones
Diffraction P47 – Optics: Unit 7.
ECE 299 Holography and Coherent Imaging
OCT (Optical Coherence Tomography) Time domain Frequency domain Coherence length.
LARGE INTESTINE Objectives:
Theoretical Background Challenges and Significance
Presentation transcript:

Tutorial on Computational Optical Imaging University of Minnesota September David J. Brady Duke University

Lectures Computational Imaging Geometric Optics and Tomography Fresnel Diffraction Holography Lenses, Imaging and MTF Wavefront Coding Interferometry and the van Cittert Zernike Theorem Optical coherence tomography and modal analysis Spectra, coherence and polarization Computational spectroscopy and imaging

Lecture 8. Optical Coherence Tomography and Modal Analysis Optical coherence tomography and biophotonics The Constant Radiance Theorem

Imaging as photon binning

The Constant Radiance Theorem

Coherent Mode Decomposition

Transformation of W on propagation

Transformation of coherent mode distribution

Measurement and CRT

Significance if coherent modes are known

Significant if coherent nodes are unknown Coherent modes for 3D incoherent sources

Biophotonics Joseph Izatt Biophotonics Laboratory, Fitzpatrick Center for Photonics and Communication Systems Biomedical Engineering Department Duke University

Biophotonic Technologies Optical Ranging and Tomography Multiphoton Microscopy Evanescent Wave Techniques

Tissue Spectroscopy

Photon Migration

Functional Imaging

OPTICAL COHERENCE TOMOGRAPHY Transverse Resolution:  x Confocal resolving power N.A. Numerical aperture Longitudinal Resolution:  L Round-trip coherence envelope FWHM  Source bandwidth FWHM ~  m ~  m

ENDOSCOPIC OPTICAL COHERENCE TOMOGRAPHY EOCT Probe: 2 m long 2.4 mm dia Rotates Hz

Esophagus IN VIVO HUMAN ENDOSCOPIC OCT Stomach Small Intestine Colon Rectum

E - Squamous Epithelium LP - Lamina Propria MM - Muscularis Mucosa SubM - Submucosa MP - Muscularis Propria BV - Blood Vessels G - Glands D - Duct Normal Esophagus IN VIVO HUMAN UPPER ENDOSCOPIC OCT E BV SubM LP+MM MP G G D E LP+MM SubM MP Aggressive Contact Suction

B – Barrett’s Esophagus A – Adenocarcinoma CANCER IMAGING WITH ENDOSCOPIC OCT Invasive Adenocarcinoma in Barrett’s Esophagus 1 mm B A

REAL-TIME, VIDEO-CORRELATED SLITLAMP-MOUNTED OPHTHALMIC OCT 6 mm depth x 14 mm width 3.5 mm depth x 6 mm width Virtual aiming beam

REAL TIME OCT IN EXPERIMENTAL RETINAL SURGERY RPE Blood Vessel Photoreceptor Layer RFNL Ganglion Cell Layer Choriocapillaris Vitreous Ti:Sapphire Femtosecond Laser RSOD 2KHz Detector 50/50 BPF Logarithmic Demodulation Processing, Display, and Archiving CCD Illumination Sample Dichroic Mirror XY Scanning 78 D Volk Lens 0 =800 nm  =90 nm 1” H 2 O

St.15 Chick embryo Histology Real-Time OCT CARDIAC MORPHOLOGY AND DEVELOPMENT IN CHICK EMBRYOS

Theory of OCT

Interesting Mathematical Issues Can a general theory of association between optical representation parameters and digital measurements be developed? Is a general theory of imaging metrics possible? What about tissue? What are ideal optical measures of tissue?