Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Andreas Kohlbecker, Pepe Ciardelli, Niels Hoffmann, Katja Luther, Andreas Müller Botanic Garden.

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Presentation transcript:

Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Andreas Kohlbecker, Pepe Ciardelli, Niels Hoffmann, Katja Luther, Andreas Müller Botanic Garden and Botanical Museum Berlin-Dahlem Dept. of Biodiversity Informatics and Laboratories

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy EDIT

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Aims EDIT aims to integrate taxonomic research at multiple levels. At the IT Level: Improve and assure reusability of data Integrate software tools into one platform (existing & new developments) An open platform of loosely coupled components A platform to support the full taxonomic workflow  The EDIT Platform for Cybertaxonomy

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy The Taxonomic Workflow Revision of an existing classification of a group of organisms Previously unclassified organisms are assigned to a “taxon”

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Bottlenecks & Hurdles

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Data Acquisition & Data Entry Reusability of Data Bottlenecks & Hurdles in Cybertaxonomy

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Data Acquisition & Data Entry Reusability of Data Bottlenecks & Hurdles in Cybertaxonomy

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Assuring Reusability of Data Many existing applications for each domain of information, but Lack of support for data exchange Hard to integrate data from different domains

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Common Data Model (CDM) New development covering all domains of information Leans on existing standards / models like TDWG Ontology Exchange format Expandable

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy IO A Software Library Build on top of the CDM A base for many platform components A data store and data server  CDM Community Store Import/Export functionality + Web Services = Glues the Platform together CDM Library

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy The Taxonomic Editor A new editor for the new data model. Offers CDM Library import/export functionality to end users. A key tool for data integration.

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Data Acquisition & Data Entry Reusability of Data The Taxonomic Editor

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Field Tools Mobile devices with a GPS receiver and the software ArcPad  Rapid data acquisition in the field (Locality, Photos, etc..) Fieldwork database

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Data Acquisition & Data Entry Reusability of Data Finding Specimens ?

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Specimen & Observation Explorer Access to GBIF occurrence data (Specimens & Observations) Based on BioCASE/ SYNTHEYS Query expansion by related taxon names has been made configurable. Result sets can be exported as ABCD (Access to Biological Collections Data) or CSV

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Data Acquisition & Data Entry Reusability of Data Crossmedia Publishing

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Crossmedia Publishing CDM GeoTools Map Service CDM Data Portal & EDIT Print Publisher

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Data Acquisition & Data Entry Reusability of Data Finding Literature

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy ViTaL - Virtual Taxonomic Library Meta Search on multiple catalogues (MetaLib) Direct access to digital publications Focused on literature relevant for taxonomy

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Workshops Tomorrow Thursday :00-12:30 Joffre 5 CDM Programmers Workshop "European Distributed Institute of Taxonomy (EDIT) for programmers“ 14:00-15:30 Joffre B EDIT Platform Users Workshop "European Distributed Institute of Taxonomy (EDIT) for Users"

TDWG Andreas Kohlbecker Taxonomic Workflow in the EDIT Platform for Cybertaxonomy Where can I learn more? “What is the EDIT Platform for Cybertaxonomy?”