Figure S UV- UV+ Relative expression levels of rhoB mRNA by qRT-PCR *
28S 18S tRNA UV-UV+ : 60J/m2 input Figure S % of actin mRNA in each fraction fractions % of rhoB mRNA levels in each fraction fractions
Figure S3 Relative luciferase activity (Rluc/FLuc) RLuc rhoB 3’UTR RLuc P53 3’UTR Donor 1Donor mockmiR- 19b (2 nM) Figure S4 Relative levels of miR-19b by qRT-PCR Transfection: ***
Figure S U6snRNARNU44RNU U6snRNA RNU44RNU48 Normalization: Relative levels of indicated miRNA by qRT-PCR miR-18amiR U6snRNARNU44RNU U6snRNARNU44RNU48 miR-30amiR-30cmiR-30e miR-21miR-223miR U6snRNARNU44RNU48 U6snRNARNU44RNU48U6snRNARNU44RNU U6snRNA RNU44 RNU48 UV- UV+
Figure S6 Amount of rhoB mRNA in crosslinked IP (qRT-PCR) UV- UV+ IP HuR ** IP Igg1
Figure S7 HuR (3A2) Igg mouse DAPIFITC No UV HuR (3A2) Igg mouse UVC (60 J/m 2 ) Merge
Tubulin HuR Topoisomerase I UV: Nuc. Cyto kDa 68 hnRNP C1 / C2 CFI Figure S8 b a Amount of rhoB mRNA in IP (qRT-PCR) UV- UV+ IP HuR ** IP Igg1
RhoB actin HuR UV: siHuRsiHuR’siCtrl Figure S9
IP Igg1 IP HuR UV+ Figure S10 Amount of rhoB mRNA in IP (qRT-PCR) Mock miR-19 * * IP Ago2 * * 35
b TUNEL – positive cells (% of total cells) (after UV treatment) Mock miR-24 miR-19b siRhoB Figure S11 a Mock miR-24 miR-19b siRhoB DAPI TUNEL DAPI TUNEL UV-UV+ ** *
Table S1 Log-Fold-Change Log-Odds miR miR miR-33a miR-92b* miR-576-5p miR-520c-3p miR-1-2-as miR miR miR-673-3p UV regulated miRNAs according to the miRNA microarray results
Table S2 Foward R everse 3’UTR rhoB5’GCTCTAGAAAGGTGCTATG AGGGCCG 3' 5’CGGGATCCCGGAGTTGGCAAGA AAGGATCT 3' 3’UTR p535’CAGACTAGTTGACTCAGAC TGACATTCT 3‘ 5’GCTAGATCTTGGCAGCAAAGTTT TATTGTA 3’ 3’UTR rhoB mut miR- 19 5’TTTGTTTTTTTATTCTTTCGA GAATTGTTTCATTGTTTGACA CTT 3’ 5’AAGTGTCAAACAATGAAACAATT CTCGAAAGAATAAAAAAACAAA 3’ 3’UTR rhoB mut-HuR5’CTGATGTTATTTGATTTAAG AAAAGGCTAAAATTTG 3’ 5’CAAATTTTAGCCTTTTCTTAAATC AAATAACATCAG 3’ 3’UTR rhoB ’GCTCTCGAGTCTGAAGAGC CGGGCCT 3’ 5’GGACTCGAGTGCCGGCAGGGG CAGG 3’ 3’UTR rhoB ’TGCTCTCGAGTTGACACTTA ATGCACTCGT 3’ 5’GGACTCGAGTGCCGGCAGGGG CAGG 3’ 3’UTR rhoB ’GCTCTCGAGTAAAGGGCAG TAACAAGTATTG 3‘ 5’GGACTCGAGTGCCGGCAGGGG CAGG 3’ 3’UTR rhoB ’GCTCTCGAGTGACAAAATG GTGAGCTTATG 3’ 5’GCTCTCGAGTGACAAAATGGTG AGCTTATG 3‘ 3’UTR rhoB ’GCTCTCGAGTGACAAAATG GTGAGCTTATG 3’ 5’GCTCTCGAGCAGGCACAAAGTT CGCTTAT 3‘ Sequences of oligonucleotides used for mutagenesis and cloning
Table S3 siHuR5’-AAGAGGCAATTACCAGTTTCA-3’ (Kawai et al., 2006) siHuR’Pool of 5’-AATCTTAAGTTTCGTAAGTTA-3’ 5’-TTCGTAAGTTATTTCCTTTAA-3’ 5’-TTCCTTTAAGATATATATTAA-3’ (Gorospe et al., 2008) siCtrl5’-ACUCUAUCUGCACGCUGACUU-3’ Sequences of siRNAs used in this study. Kawai et al., Mol Cell Biol. (2006) 26(8): Galban et al., Mol Cell Biol. (2008) 28(1):93-107
Table S4 RhoB Forward5’-GTGCCTGCTGATCGTGTTC-3’ RhoB Reverse 5’-GCGGTCGTAGTCCTCCTG-3’ Beta-actin Forward 5’-CCTCGCCTTTGCCGATCCG-3’ Beta-actin Reverse 5’-ATGCCGGAGCCGTTGTCG-3’ p53 Forward 5’-GTGGTGGTGCCCTATGAG-3’ p53 Forward 5’-GAGTCTTCCAGTGTGATGATG-3’ GAPDH Forward 5’-TGCACCACCAACTGCTTAGC-3’ GAPDH Reverse5’-GGCATGGACTGTGGTCATGAG-3’ RLuc Forward 5’-TGGTAACGCGGCCTCTTC-3’ RLuc Reverse 5’-ATTTGCCTGATTTGCCCATAC-3’ FLuc Forward 5’-GGATGGAACCGCTGGAGAG-3’ Fluc Reverse 5’-GCTTCTGCCAACCGAACG-3’ Sequences of primers used for RTqPCR experiments