Anomalous Diffraction Project Status Update 1-22-09.

Slides:



Advertisements
Similar presentations
Change-Point Detection Techniques for Piecewise Locally Stationary Time Series Michael Last National Institute of Statistical Sciences Talk for Midyear.
Advertisements

Don’t Ever Give Up!.
Copyright © 2007 Pearson Education, Inc. Publishing as Pearson Addison-Wesley Chapter 27 Inferences for Regression.
Copyright © 2010 Pearson Education, Inc. Chapter 27 Inferences for Regression.
With Lenses Created by Derek J. Wells. Under the expressed written consent of Derek J. Wells in accordance with the rules and by-laws of Derek J. Wells.
Here, we’ll show you how to draw a ray diagram for a convex mirror.
Followed by a few examples of
Eyes for Relighting Extracting environment maps for use in integrating and relighting scenes (Noshino and Nayar)
Quick Sort, Shell Sort, Counting Sort, Radix Sort AND Bucket Sort
Reciprocal Space This chapter has been downloaded onto the Mech 580 Electron Microscopy website. Since the reciprocal lattice does not pertain to electron.
Chem Single Crystals For single crystals, we see the individual reciprocal lattice points projected onto the detector and we can determine the values.
IPCMS-GEMME, BP 43, 23 rue du Loess, Strasbourg Cedex 2
R Measurement at charm resonant region Haiming HU BES Collaboration Charm 2007 Cornell University Ithaca, NY. US.
Tuesday, May 15 - Thursday, May 17, 2007
John Bargar 2nd Annual SSRL School on Hard X-ray Scattering Techniques in Materials and Environmental Sciences May 15-17, 2007 What use is Reciprocal Space?
lecture 2, linear imaging systems Linear Imaging Systems Example: The Pinhole camera Outline  General goals, definitions  Linear Imaging Systems.
Neutron Scattering 102: SANS and NR
Unit 2, Part 3: Characterizing Nanostructure Size Dr. Brian Grady-Lecturer
Section 9.3 Sample Means.
Analysis of Variance. ANOVA Probably the most popular analysis in psychology Why? Ease of implementation Allows for analysis of several groups at once.
Accuracy Precision % Error
GENERAL CHEMISTRY 1. Chapter 1 Chemistry Definition – Study of structure and interaction of matter, including energy changes. Will discuss energy in.
X’Pert Epitaxy Software Version 3.0
Bragg Planes How to do a Fourier transform on paper with no calculations at all.
Statistics and Quantitative Analysis Chemistry 321, Summer 2014.
Sample-Based Epidemiology Concepts Infant Mortality in the USA (1991) Infant Mortality in the USA (1991) UnmarriedMarriedTotal Deaths16,71218,78435,496.
Comparing XRD data for 225C and 300C growth of Si-Heusler. Some composition assumption for sample grown at 225C.
Accuracy Precision % Error. Variable is a factor that affects the outcome of an experiment. 3 Types of variables Experimental/ Independent Variable The.
Diffraction Basics Coherent scattering around atomic scattering centers occurs when x-rays interact with material In materials with a crystalline structure,
Chem Patterson Methods In 1935, Patterson showed that the unknown phase information in the equation for electron density:  (xyz) = 1/V ∑ h ∑ k.
Simulations of the double funnel construction for LET. Comparison with a single funnel The aim was to optimise the double funnel configuration to give.
GEM MINIDRIFT DETECTOR WITH CHEVRON READOUT EIC Tracking Meeting 10/6/14 B.Azmoun, BNL.
Confidence Intervals for Proportions Chapter 8, Section 3 Statistical Methods II QM 3620.
Chem Structure Factors Until now, we have only typically considered reflections arising from planes in a hypothetical lattice containing one atom.
Optimising Cuts for HLT George Talbot Supervisor: Stewart Martin-Haugh.
3/2003 Rev 1 II.3.15b – slide 1 of 19 IAEA Post Graduate Educational Course Radiation Protection and Safe Use of Radiation Sources Part IIQuantities and.
Copyright © 2012 Pearson Education. All rights reserved © 2010 Pearson Education Copyright © 2012 Pearson Education. All rights reserved. Chapter.
1 Data Acquisition What choices need to be made?.
Precision and Accuracy Agreement Indices in HSP An Introduction to Rietveld Refinement using PANalytical X’Pert HighScore Plus v2.2d Scott A Speakman,

Page 1 Phys Baski Diffraction Techniques Topic #7: Diffraction Techniques Introductory Material –Wave-like nature of electrons, diffraction/interference.
© Copyright Pearson Prentice Hall Slide 1 of Measurements and Their Uncertainty On January 4, 2004, the Mars Exploration Rover Spirit landed on.
Slide 1 of 48 Measurements and Their Uncertainty
Peterson xBSM Optics, Beam Size Calibration1 xBSM Beam Size Calibration Dan Peterson CesrTA general meeting introduction to the optics.
CHAPTER 2.3 PROBABILITY DISTRIBUTIONS. 2.3 GAUSSIAN OR NORMAL ERROR DISTRIBUTION  The Gaussian distribution is an approximation to the binomial distribution.
Uncertainty2 Types of Uncertainties Random Uncertainties: result from the randomness of measuring instruments. They can be dealt with by making repeated.
Update on Diffractive Dijets Hardeep Bansil University of Birmingham 12/07/2013.
Info Read SEGY Wavelet estimation New Project Correlate near offset far offset Display Well Tie Elog Strata Geoview Hampson-Russell References Create New.
GEOMETRIC STILL LIFE PAINTING PAINTING STUDIO. WHAT ARE YOU GOING TO BE DOING? You have recently completed a painting using acrylic paint that shows form.
Crystallography : How do you do? From Diffraction to structure…. Normally one would use a microscope to view very small objects. If we use a light microscope.
Computer Graphics Lecture 30 Mathematics of Lighting and Shading - IV Taqdees A. Siddiqi
Extrapolation Techniques  Four different techniques have been used to extrapolate near detector data to the far detector to predict the neutrino energy.
Internal Target: Progress Report F. F. R. S. L. (* DISAT) Contents: Second target: production.
Crystal Structure and Crystallography of Materials Chapter 14: Diffraction Lecture No. 2.
Lecture 53: X-ray crystallography. Electrons deflect x-rays We try to recreate electron density from the x-ray diffraction pattern Each point in space.
Week 2 Experiments: Diffraction APS July 2008 Run s216 (Ternary Heusler grown at 300C) s231 (Binary Heusler grown at 150C) s209 (MnCoGe DMS Binary)
Chapter 25 Wave Optics.
CHARACTERIZATION OF THE STRUCTURE OF SOLIDS
FOURIER THEORY: KEY CONCEPTS IN 2D & 3D
Reflectivity Measurements on Non-ideal Surfaces
Convolutional Networks
Unit 1: Matter & Measurement
Chapter 5 Quality Assurance and Calibration Methods
What use is Reciprocal Space? An Introduction
6.2 Grid Search of Chi-Square Space
Uncertainty and Error
3.3 Experimental Standard Deviation
Ruitian Zhang, Rosangela Itri, Martin Caffrey  Biophysical Journal 
Sean A. McKinney, Chirlmin Joo, Taekjip Ha  Biophysical Journal 
Volume 102, Issue 6, Pages (March 2012)
Presentation transcript:

Anomalous Diffraction Project Status Update

Completed So Far Incorporating Daniel Haskel’s solid-state effects into the model Incorporating experimental uncertainties into the data and fits Inverting the ratios taken, so I fit S1/F instead of F/S1 Creating and testing a full model of the Bragg reflections and slit function Systematically fitting the data, varying the Debye- Waller factor

Solid State Effects So far, I’ve used only the theoretical scattering factors because of the absence of measured factors for Ge.

Uncertainties Since we originally took the data with DAFS in mind, the uncertainty from the amplitudes are fairly low The larger source of uncertainty comes from the L-scan intensities, which were used to scale all the amplitudes – the superlattice peaks were relatively weak and a peak shape suffered – Could have been avoided if I wasn’t trying to get more compositions than I had time for Of note is that some data sets lack the (111) amplitude data. – Again, could have been avoided if I hadn’t tried to get too many compositions (took lots of data at the Fundamental)

Inverting the Data Since one reason for fitting intensity ratios rather than intensity is to ‘normalize’ to the fundamental, Yong suggested fitting S1/F and S2/F rather than the reverse. As expected, this did not noticeably affect the fits or results.

Slit Function Correction Several models were attempted taking various short-cuts and making various assumptions None gave a correction even close to that of the Full Model: – 3D Lorentian Bragg Reflection – 2D Slit Window in 3-space, sectioning the Ewald Sphere – Correct reflection widths confirmed by comparing modeled scans to various data sets (see next slides)

Detecor L-direction Ewald Sphere Bragg Reflection q kiki kfkf Another Bragg Reflection kfkf Blending Lab with Reciprocal Space Whatever intersects the Ewald sphere in reciprocal space will become scattered photons in lab space. Sample Slits

This is only a 2D representation. The Bragg reflection is really a 3D volume and the Ewald sphere is a surface. The slits limit the amount of the Ewald sphere for the detector to see. L-direction Ewald Sphere Slits limit how much solid angle of the Ewald Sphere the detector can see. The diffractometer manipulates the Ewald Sphere so that it travels through the Bragg reflection along L. Bragg Reflection Illustrating an L-Scan

The Model Right: A 2D representation of the final Lorentian used for all three reflections and four compositions Below: an example of the modeled slit window and the intensity it captured from the Ewald Sphere. This was summed as one data point in a diffractometer scan such as an L-scan.

Confirming Model Accuracy With known slit sizes, all I had to do was model the three reflection widths. I had all three directions (L, In-Plane, and Phi) scanned for the Fundamental and the (111)-type to test the model One set of widths clearly work for all three directions, both reflections and most compositions. L-scan’s tails are off due to interface fringes

Final Correction The same model also worked for a data series with varying slit sizes. Right: The final Corrections used in the anomalous diffraction fits.

Systematic Fitting The Debye-Waller factor measured (including the latest Slit correction) gave a value of σ=0.13 → I measured = I 0 exp(- σq i 2 ), where i represents different reflections This value is still probably not accurate because σ is actually different for different directions The measured value allows a range, which are systematically set and fit. The proper value is determined based on the fit outputting the measured composition.

Fits with All Corrections but Sold State Next slide shows results from these fits We desire for an acceptable fit: – low nchisq value (first param) – Co-Mn ratio near 2 (panel 2, blue) – Ge comp near 30, 35, 40 and 45 respectively (panel 2, red) – Co-Mn swapping = 0 (panel 3, red)

Compositions Fit Parameters

Adding Solid State Effects Problem: I don’t get compositions that are correct for the Ge-level It seems as though the spike in the Ge scattering factor is the cause as residuals go down everywhere else when adding solid state effects.

Compositions Fit Parameters

Chosen Fits (no SS): Ge30 Data

Chosen Fits (no SS): Ge35 Data

Chosen Fits (no SS): Ge40 Data

Chosen Fits (no SS): Ge45 Data