Taverna in App4Andy. Current status Version 1.0 – AWS-based NGS annotation pipeline – Completed Boran, N’Dama, Cape Buffalo Processed Watson data through.

Slides:



Advertisements
Similar presentations
10 de abril de 2014 Cloud Services for Projects in Bioinformatics: Technical Considerations and Business Fernando Barraza Omicsco Universidad de San Buenaventura.
Advertisements

Making ICSPs ‘doable’ for small communities. Whistler Centre for Sustainability A mission-driven, enterprising non-profit Planning, engagement and implementation.
Experiences In Building Globus Genomics Using Galaxy, Globus Online and AWS Ravi K Madduri University of Chicago and ANL.
Software for the Data-Driven Researcher of the Future Dr. Paul Fisher
Dawei Lin, Ph.D. Director, Bioinformatics Core UC Davis Genome Center July 20, 2008, SLIMS (Solexa sequencing.
Aleksi Kallio CSC – IT Center for Science Chipster and collaboration with other bioinformatics platforms.
TGAC Training Coordination for the BBSRC Strategically-Funded Institutes Tanya Dickie: Bioinformatics & Biomathematics Training.
The iPlant Collaborative Community Cyberinfrastructure for Life Science Tools and Services Workshop Discovery Environment Overview.
NGS Analysis Using Galaxy
Thomas Hacker Barb Fossum Matthew Lawrence Open Science Grid May 19, 2011.
Customized cloud platform for computing on your terms !
Abstract Visualization of protein structural data is an important aspect of protein research. Incorporation of genomic annotations into a protein structural.
RESPONSIBLE CARE ORIENTATION – McKENZIE VALVE DAVE HERRIN RESPONSIBLE CARE COORDINATOR.
Research Information Centre Framework Alex D Wade Director – Scholarly Communication Microsoft External Research Microsoft Corporation.
14/11/11 Taverna Roadmap Shoaib Sufi myGrid Project Manager.
Genomics Virtual Lab: analyze your data with a mouse click Igor Makunin School of Agriculture and Food Sciences, UQ, April 8, 2015.
Bioinformatics Institute work with ASAS Genomics Centre By Dan Jones.
Bio-IT World Asia, June 7, 2012 High Performance Data Management and Computational Architectures for Genomics Research at National and International Scales.
Per Møldrup-Dalum State and University Library SCAPE Information Day State and University Library, Denmark, SCAPE Scalable Preservation Environments.
Creating With Code.
The iPlant Collaborative Community Cyberinfrastructure for Life Science Tools and Services Workshop Objectives.
Informatics Paul Fisher. Current Status Work done on Trichuris muris –Joanne Pennock and Scott Levison –PubMed : – gene expression analysis using.
Taverna Workflow. A suite of tools for bioinformatics Fully featured, extensible and scalable scientific workflow management system – Workbench, server,
IPlant Collaborative Tools and Services Workshop iPlant Collaborative Tools and Services Workshop Collaborating with iPlant.
RNA-Seq in Galaxy Igor Makunin QAAFI, Internal Workshop, April 17, 2015.
David R. McWilliams, Ph.D. Section of Statistical Genetics, Department of Biostatistical Sciences, Center for Public Health Genomics Bioinformatician IV.
Cloud infrastructure for training in Life Sciences Manuel Corpas The Genome Analysis Centre.
Vaccine Quo Vadis? 20 July 2010 Alan Bernstein, O.C., Ph.D. Executive Director, Global HIV Vaccine Enterprise.
Information MSU Through the eyes of the users! Dewitt Latimer, Ph.D. Chief Information Officer
Next Generation Sequencing pipeline: a joint LONI – BIRN [UCLA – UCI] collaborative project F. Macciardi – March 16, 2011.
Current Challenges in Metagenomics: an Overview Chandan Pal 17 th December, GoBiG Meeting.
1 Taverna CISTIB Ernesto Coto Taverna Open Workshop, October 2014.
Tsute (George) Chen Bioinformatics Core Department of Microbiology The Forsyth Institute March 24 th, 2015 HOMD A Tour to the Data and Tools.
February 3, 2009 Council of American Jewish Museums Annual Conference Mira Goldfarb, Senior Consultant Synagogue-Museum: Mission Compatible? A Strategic.
How Things Get Done: People, Processes & Skills presented by NOAA Web Committee Representatives for the 2007 NOAA Virtual WebShop.
Stian Soiland-Reyes myGrid, School of Computer Science University of Manchester, UK UKOLN DevSci: Workflow Tools Bath,
Nature Reviews/2012. Next-Generation Sequencing (NGS): Data Generation NGS will generate more broadly applicable data for various novel functional assays.
UK NGS Sequencing Update July 2009 Dr Gerard Bishop - Division of Biology Dr Sarah Butcher – Centre for Bioinformatics.
Cole David Ronnie Julio. Introduction Globus is A community of users and developers who collaborate on the use and development of open source software,
Lightweight construction of rich scientific applications Daniel Harężlak(1), Marek Kasztelnik(1), Maciej Pawlik(1), Bartosz Wilk(1) and Marian Bubak(1,
Analysing African and European cattle with Taverna 2.2 Stuart Owen Based on the work by : Professor Andy Brass and Mohammad Khodadadi.
Cancer Center Support Grant Site Review Date Cancer Center Support Grant Site Review Date Genomics High-Throughput Facility (GHTF) and Bioinformatics Core.
The iPlant Collaborative Community Cyberinfrastructure for Life Science Tools and Services Workshop BISQUE.
Bio-IT World Conference and Expo ‘12, April 25, 2012 A Nation-Wide Area Networked File System for Very Large Scientific Data William K. Barnett, Ph.D.
US Sequencing Project Funded by NSF Two-year project Start date: Sept 1, 2004 Follow-up project for full sequencing of chromosomes 1, 10 and 11.
Galaxy Community Conference July 27, 2012 The National Center for Genome Analysis Support and Galaxy William K. Barnett, Ph.D. (Director) Richard LeDuc,
THE BIOVEL PROJECT: ROBUST PHYLOGENETIC WORKFLOWS RUNNING ON THE GRID Bachir Balech (IBBE-CNR)
RC ICT Conference 17 May 2004 Research Councils ICT Conference The UK e-Science Programme David Wallace, Chair, e-Science Steering Committee.
Kindergartens Strategic plan Kindergartens continue to be an area of major priority in our 2012 – 2013 strategic plan. During 2012 – 2013 we will:
Taverna Server + Client Libraries Donal Fellows and Rob Haines.
EGI-InSPIRE RI EGI-InSPIRE RI EGI-InSPIRE EGI-InSPIRE RI EGI-InSPIRE EGI-InSPIRE RI
Modernize Curriculum Review Workflow Kristine Belknap Bruce Han Michael Hsu Elvin Rey Magsino Young Phan Advisor: Dr. Chengyu Sun Liaison: Dr. Parviz Partow-Navid.
Canadian Bioinformatics Workshops
© 2010 IBM Corporation STRATEGIC ADVISORY COUNCIL MARCH 2011 Enterprise Architecture - Advisory Discussion – Greg Dietzel Vice President, Client Unit Director,
Atlas 1 18/03/2011 Shoaib Sufi myGrid/Taverna taking stock: scene setting.
Canadian Bioinformatics Workshops
Document & Web Content Management
NeDICC meeting, 18 February 2016
NSF Funded Genome2Phenome RCN
Transactions and Code Sets and the National Provider Identifier (NPI) – Getting Value From the HIPAA Standards Presented by: Steven S. Lazarus, PhD, CPEHR,
Agenda Workforce Development Coaching Mentoring
Making Data Matter: Earth Science Information Partners
Galaxy-P for…? P for ? Possibilities? Palaeoanthropology? Padmasana?
CAUL Award Presentation
Taverna workflow management system
Yating Liu July 2018 G-OnRamp workshop
SharePoint Foundation 2010
Configuration management suite
Software Prototyping, Training and Networking
Collaborative Business Models
Presentation transcript:

Taverna in App4Andy

Current status Version 1.0 – AWS-based NGS annotation pipeline – Completed Boran, N’Dama, Cape Buffalo Processed Watson data through Andrea’s pipeline – Not done through cloud (yet) Updating image resources with current data and code

Next steps TSB grant – Begins in May – To address NHS requirements and security (by Eagle Genomics) Pre-analysis tool identification – pre-App4Andy SNP annotation….i.e…Sequence alignment – Replicate the functionality of Galaxy

Funding Bioinformatics – TSB – Ph.D (Andrea) Infrastructure – Top sliced

Alignment Strategic – Promotion of Taverna in high throughput analysis – Outreach to major data centres – Collaborations that follow Strategic tracks on funding Council agendas Dependencies – Taverna Server – Taverna Server Client Libraries

Alignment Dependents – Next Gen. (TSB) – NeISS/Methodbox (Cloud execution of workflows) – Taverna as a service (in the Cloud) – Andrea