PMID:15889139. Mutations in two, or more, genes IGI Mutations in a single gene IMP Biological Process: meiosis? homologous recombination?

Slides:



Advertisements
Similar presentations
Martin John Bishop UK HGMP Resource Centre Hinxton Cambridge CB10 1 SB
Advertisements

Annotation of Gene Function …and how thats useful to you.
1 Inference of Regulatory Networks via Systems Genetics Ina Hoeschele.
G2/M checkpoints Are imperfectly understood Monitor “completion” Assess genetic integrity Are comprised of signal, sensor, transducer and effector elements.
Global Mapping of the Yeast Genetic Interaction Network Tong et. al, Science, Feb 2004 Presented by Bowen Cui.
Annotating Gene Products to the GO Harold J Drabkin Senior Scientific Curator The Jackson Laboratory Mouse.
POC tutorial#3: Annotation This tutorial will run automatically in Quicktime. To run the tutorial at your own pace use the internal controllers within.
Gene function analysis Stem Cell Network Microarray Course, Unit 5 May 2007.
Microbial Genetics (Micr340) Lecture 6 Genetic Analysis.
COG and GO tutorial.
pt 10 pt 15 pt 15 pt 20 pt 20 pt 25 pt 25 pt 5 pt 5 pt 10 pt 10 pt 15 pt 15 pt 20 pt 20 pt 25 pt 25 pt 5 pt 5 pt 10 pt 10 pt 15 pt 15 pt 20 pt.
BRCA2 Blue: Rad51; Green: BRCA2
BICH CACAO Biocurator Training Session #3.
Gene Ontology at WormBase: Making the Most of GO Annotations Kimberly Van Auken.
Modeling the Cell Cycle with JigCell and DARPA’s BioSPICE Software Departments of Computer Science* and Biology +, Virginia Tech Blacksburg, VA Faculty:
Unit 1: The Language of Science  communicate and apply scientific information extracted from various sources (3.B)  evaluate models according to their.
PAT project Advanced bioinformatics tools for analyzing the Arabidopsis genome Proteins of Arabidopsis thaliana (PAT) & Gene Ontology (GO) Hongyu Zhang,
Sigma-aldrich.com/cellsignaling Hypothetical Model on the Functions of the WRN, BLM and MRE11.
Using The Gene Ontology: Gene Product Annotation.
Bellwork: Identify which “PHASE” the cells are going through and DRAW that cell.
The role of the S. pombe MRN complex in the removal of covalently bound protein from the DNA Edgar Hartsuiker Kenichi Mizuno Tony Carr.
CACAO Training Fall Community Assessment of Community Annotation with Ontologies (CACAO)
Annotating Gene Products to the GO Harold J Drabkin Senior Scientific Curator The Jackson Laboratory Mouse.
SPH 247 Statistical Analysis of Laboratory Data 1May 14, 2013SPH 247 Statistical Analysis of Laboratory Data.
From Functional Genomics to Physiological Model: Using the Gene Ontology Fiona McCarthy, Shane Burgess, Susan Bridges The AgBase Databases, Institute of.
Introduction to the GO: a user’s guide Iowa State Workshop 11 June 2009.
Getting Started: a user’s guide to the GO GO Workshop 3-6 August 2010.
Functional Annotation and Functional Enrichment. Annotation Structural Annotation – defining the boundaries of features of interest (coding regions, regulatory.
1 Gene function annotation. 2 Outline  Functional annotation  Controlled vocabularies  Functional annotation at TAIR  Resources and tools at TAIR.
Getting Started: a user’s guide to the GO TAMU GO Workshop 17 May 2010.
Cellular macromolecule catabolism cellular macromolecule metabolism cytoplasm organization and biogenesis establishment of cellular localization intracellular.
CACAO Training Fall Community Assessment of Community Annotation with Ontologies (CACAO)
 DNA Microarray. What is DNA Microarray?  DNA Microarray allows scientists to perform an experiment on thousands of genes at the same time.
Genetic map Physical map (open reading frames – gene sequences)
Introduction to the GO: a user’s guide NCSU GO Workshop 29 October 2009.
Proteomics, the next step What does each protein do? Where is each protein located? What does each protein interact with, if anything? What role does it.
CACAO Training Jim Hu and Suzi Aleksander Fall 2015.
1 Annotation EPP 245/298 Statistical Analysis of Laboratory Data.
An example of GO annotation from a primary paper Rebecca E. Foulger (UniProt Curator) GO Annotation Camp, June 2005 PMID:
CST Prep: A. DNA, RNA, & Proteins Protein Differences.
Fanconi Anemia Anthony Winchell. What is Fanconi Anemia?
VARIATION IN HUMANS By Desiree Williams. Mutations:  Mutations are A source of variation, not THE only source.  Mutations cause a change in D.N.A. 
An example of GO annotation from a primary paper GO Annotation Camp, July 2006 PMID:
BLOOM HELICASE (and BLOOM SYNDROME)
CACAO Training Jim Hu and Suzi Aleksander Fall 2015.
Chapter 9 Cell Cycle and Cancer. Figure 17-1 Molecular Biology of the Cell (© Garland Science 2008) Cell Cycle.
WARM UP List anything and everything you know about chromosomes, mitosis, meiosis, or cell division.
If two mutations are required to contribute to one phenotype
CACAO Training ASM-JGI 2012.
Annotating with GO: an overview
D D ? ? D D ? ?Check sequences TAIR? E. coli? ? ISS IDA, IMP, IGI, IC
Genetic Variation within Populations 11.1
Figure: Caption: The cell cycle is controlled at several checkpoints, including one at the G2/M transition, and another in late G1 phase before.
Cell-Cycle Checkpoints: Keeping mitosis in check
KEY CONCEPT A population shares a common gene pool.
Friday & Monday Do now #3: (Protein Synthesis & Meiosis Unit) What type of cells would you expect to be haploid (containing half the number.
Genetic Variation Within Populations
Relationship between Genotype and Phenotype
Linkage and Gene Maps 11.5.
Today’s Agenda: Questions from Chapter 1 Introduce key ideas in
Annotating Gene Products to the GO
Relationship between Genotype and Phenotype
INTRODUCTION TO MOLECULAR GENETICS
Volume 3, Issue 4, Pages (April 2003)
DNA Double-Strand Breaks Come into Focus
INTRODUCTION TO MOLECULAR GENETICS
Today’s Agenda: Questions from Chapter 1 Introduce key ideas in
Relationship between Genotype and Phenotype
A population shares a common gene pool.
Volume 3, Issue 4, Pages (April 2003)
Presentation transcript:

PMID:

Mutations in two, or more, genes IGI Mutations in a single gene IMP Biological Process: meiosis? homologous recombination?

Physical interactions between proteins IPI Cellular Component: complex involving Sgs1p, Top3, and Rmi1p with: SGS1TOP3

Biological Process: S phase DNA damage checkpoint? IGI IMP with: TOF1MRC1CSM3RAD53

than wild type. IMP Biological Process: increased recombination?

IMP IGI SGS 1 with: Biological Process: S phase DNA damage checkpoint? response to DNA damage?

snip

Biological Process: meiosis? homologous recombination? Cellular Component: complex involving Sgs1p, Top3, and Rmi1p? S phase DNA damage checkpoint? response to DNA damage? increased recombination? Molecular Function: no information in this paper

Cellular Component: complex involving Sgs1p, Top3, and Rmi1p? snip Searching/browsing for an appropriate term did not identify a term which described this complex Request a New Term? Sgs1p/Top3 complex? RecQ helicase-Topo III complex

Physical interactions between proteins IPI Cellular Component: complex involving Sgs1p, Top3, and Rmi1p with: SGS1TOP3

Cellular Component: snip RecQ helicase-Topo III complex IPI with: SGS1TOP3 For RMI1 For SGS1 IPI with: RMI1TOP3 RecQ helicase-Topo III complex For TOP3 IPI with: RMI1SGS1 RecQ helicase-Topo III complex

Biological Process: meiosis? homologous recombination? S phase DNA damage checkpoint? response to DNA damage? increased recombination?

Biological Process: response to DNA damage stimulus

Biological Process: response to DNA damage stimulus IGI IMP with: TOF1MRC1 CSM3 RAD53

Molecular Function: no information in this paper Molecular function unknownND this is the only paper!

SGS1TOP3 Inferred from Mutant Phenotype TOF1MRC1 CSM3RAD