dataset.csv bc_terms_results.RData - bcterm$term204[ ] bc-variable.csv (Scraped i2b2 query) bc_qa2.Rmd bc_qa_txform.R bcread_api_key.R bc_fetch.Rmd (Extracts.

Slides:

Advertisements

Similar presentations

516 (32723) Phase III trial comparing AC (x4)taxane (x4) with taxane (x8) as adjuvant therapy for node-positive breast cancer: Results of N-SAS-BC02.

Advertisements

STAGING MCR Staff Show Me Healthy Women March 27, 2008 Supported by a Cooperative Agreement between DHSS and the Centers for Disease Control and Prevention.

Share Thoughts on Breast Cancer Study Overview and Statement of Work GPC Global Webinar, December 18,

Comparison of Selected Genes in Curtis Breast Grouped by Cancer and Normal Type log2 median-centered intensity 1. Breast (144) 2. Benign Breast Neoplasm.

Cancer Registry Coding Changes for 2014 Presented by the Kentucky Cancer Registry February, 2014.

Cancer Staging. What is cancer staging? Staging describes the severity of a person’s cancer based on the extent of the original (primary) tumor and whether.

Quality Cancer Data The Vital Role of Cancer Registrars in the Fight against Cancer Saves Lives.

1 Breast MP/H Task Force Multiple Primary Rules Histology Coding Rules 2007.

Genetic and Molecular Epidemiology

ARIES User Group June 2, Today’s Presentation will cover:  Limitations to Ad Hoc report design in ARIES ReportExport  How to merge two ARIES reports.

Azara Proprietary & Confidential Overview June 2014 Improving Patient Outcomes through Data.

FEMALE BREAST CANCER JOHNS HOPKINS HOSPITAL CANCER REGISTRY Prepared by Theresa SanLorenzo-Caswell, CTR 10/03/20014.

8/10/2015Iowa Statewide Data Conference1. 8/10/2015Iowa Statewide Data Conference2.

Epidemiological study on INVASIVE BREAST CANCER treated at Hotel Dieu de France Hospital University of Saint-Joseph Faculty of Medicine Gerard Abadjian,

Factors Associated with Bilateral vs. Unilateral Mastectomy in a Diverse, Population-based Sample of Breast Cancer Patients Sarah T. Hawley, PhD, MPH University.

Consent2Share Linking Cohort Discovery to Consent David R Nelson MD Assistant Vice President for Research Professor of Medicine Director, Clinical and.

Cancer Estimated US Cancer Cases Cancer Incidence Rates for Women, USA.

1 Study of Tamoxifen and Raloxifene STAR Larry Wickerham, MD NSABP STAR Project Officer.

DEVELOPMENT QA REPORTS A Series of Reports to Enforce Compliance with Your PeopleSoft Development Standards Leandro Baca.

Cancer Staging.

**Database Notes** New Unit Plan Microsoft Access - known as a database management system or DBMS Database – a collection of organized information. Can.

PANCREATIC CANCER JOHNS HOPKINS HOSPITAL CANCER REGISTRY 2009.

2015 CHANGES IN REPORTING REQUIREMENTS AND CANCER CODING INSTRUCTIONS KENTUCKY CANCER REGISTRY SPRING TRAINING 2015 PRESENTED BY FRANCES ROSS.

Role of the Surgeon in Cancer Management A. Responsible for the initial diagnosis and management of solid tumors. B. Responsible for the Definitive Surgical.

Colon Cancer. Multihit Concept Clinical Information Clinical Information 1. Patient identification a. Name b. Identification number c. Age (birth date)

Cutaneous Squamous Cell Carcinoma and Other Cutaneous Carcinomas Regional lymph nodes for skin sites of the head and neck. Compton, C.C., Byrd, D.R., et.

THYROID CANCER JOHNS HOPKINS HOSPITAL CANCER REGISTRY Prepared by Theresa SanLorenzo-Caswell, CTR 10/16/20014.

ACIS Introduction to Data Analytics & Business Intelligence Ad-hoc Reporting Query Basics.

Module 4: Central Randomization System (CRS). This training session contains information regarding: Overview of Data Collection & Entry Overview of Data.

Should liver metastases of breast cancer be biopsied to improve treatment choice? M. A. Locatelli, G. Curigliano, L. Fumagalli, V. Bagnardi, G. Aurilio,

ANALYTIC LUNG CANCER by CLASS N = 351 Class 0: Dx’d at JHH only 1: Dx’d at JHH and received all/part of 1st course tx at JHH 2: Dx’d at an outside facility.

For Under 65s who meet eligible criteria LOCATION: PRACTICE LIAISON | POWER POINT PRESENTATIONS 2016.

Research Tools Brought to you by the Clinical and Translational Science Institute Presented by: Terri Shkuda Systems Analyst Research Informatics The Penn.

Increase in the Use of Double Mastectomies for the Treatment of Early-Stage Breast Cancer in California Cyllene R. Morris, DVM, PhD California Cancer Registry.

BY FRANCES ROSS, CTR PRESENTED AT THE NAACCR ANNUAL CONFERENCE JUNE, 2008 Record Consolidation Test with the 2007 Multiple Primary/Histology Rules.

Presented at the NAACCR Annual Conference Quebec City June 22, 2010.

Staging System and Excision Types Tae Won Kim, MD PCOM Tumor Review

Using CDC Edits Metafile in the Registry to Support Clinical Trials Recruitment Alan R. Houser, MA, MPH C/NET Solutions Dennis Deapen, DrPH Los Angeles.

Virginia Cancer Registrars Association and Virginia Cancer Registry Annual Meeting October 3, 2007.

Presented By Shin Fujita at 2016 ASCO Annual Meeting

Summary of staging criteria for cancers of the oral cavity, oropharynx, hypopharynx, and larynx. Carcinoma in situ is stage 0, and presence of distant.

WHI Cancer Survivor Cohort (CSC)

NON-SMALL CELL LUNG CANCER

Optimizing your EMR in the Cancer Registry

Prognostic significance of tumor subtypes in male breast cancer:

Ductal Carcinoma (Breast Cancer)

DROC Request from Cancer CRG Preliminary feasibility query 06/13/2017

JOHNS HOPKINS CANCER REGISTRY 2009

ANALYTIC PANCREATIC CANCER by CLASS N = 369

Abby Crocker & Steve Kappell

But how to treat those with positive SLNB? Results and Discussion

Figure 1. MORT gene silencing is early event in cancer

PCORnet Modular Program 1

سرطان الثدي Breast Cancer

קבלת ההחלטה בנושא דרגת אי כושר

Consort Diagram 600 pts with 644 eyes accessed for eligibility

Colon AJCC Case Answers

4155 primary hepatocellular carcinoma with known diagnosis month/year

TCGA Clinical Data Analysis of Sources of Error Mary E. Edgerton, MD, PhD Department of Pathology UT MD Anderson Cancer Center October 7, 2010.

Combined data from RISC (n=3,024) and San Raffaele dataset (n=1,067)

GOCS GRUPO ONCOLÓGICO COOPERATIVO DEL SUR

Breast Cancer SSG 14th November

Consort Diagram 600 pts with 644 eyes accessed for eligibility

Nadia Howlader, PhD National Cancer Institute

Text Mining for Data Quality Analysis of Melanoma Tumor Depth

Module 4: Central Randomization System (CRS)

Principles and Practice of Radiation Therapy

Trevor D. Thompson NAACCR Conference 2019 Mathematical Statistician

Presentation transcript:

dataset.csv bc_terms_results.RData - bcterm$term204[ ] bc-variable.csv (Scraped i2b2 query) bc_qa2.Rmd bc_qa_txform.R bcread_api_key.R bc_fetch.Rmd (Extracts db files) bc_fetch.Rmd (Extracts db files) bc-data-files/*.db dataset.R ‘KUMC’ bc_qa_p1.RPres bc_excl.Rmd (QA for 1 site) bc_excl.Rmd (QA for 1 site) bc_excl_all.Rmd (QA for all sites) bc_excl_all.Rmd (QA for all sites) bc_qa_txform.R bc_excl_all_results.RData - site.survey.sample.size$KUMC - site.survey.sample.size$MCRF bc_fetch_results.Rdata bc_excl_KUMC.html Breast Cancer Master Diagram

bc_excl.Rmd (QA for 1 site) bc_excl.Rmd (QA for 1 site) bc_excl_KUMC.html dataset.csv bc_terms_results.RData - bcterm$term204[ ] bc-data-files/*.db dataset.R ‘KUMC’ dataset[ ] – Describes REDCap file tumor.site[ ] – translated enctr-level with.var => tumor.site[P#,E#, Var1, Var2...] sample.size[ ] – pt-level eligibility flags bc_qa_txform.R builder.summary(conn.site)  variable pt, enc & fact cnts check.cases(tumor.site)  survey.sample count.cases  survey.sample.size survey.sample[ ] tumor.site[ ] survey.sample.size[ ] Eligibility

GPC Sites KUMC IOWA REDCap

BC Expanded Datamart Adds to implemented set of TR variables (v=42) 71 Add’l TR Variables 8 Add’l EMR Variables (~100 Concept Facts) Sites run new query, identified and filter for consented pts

Exclusion Criteria used by bc_excl ## Analytic Dataset: Tumors, Inclusion Criteria Data of Dx –0390-Date of Diagnosis If NULL then use ‘Primary Site’, 0400-Primary Site If NULL then use ‘Seer Site Breast’ Exclusion Criteria - Male - <18 yrs - If only tumor morphology was lobular carcinoma in situ? –‘Morphology’==8520/2 Stage 4 –AJCC or SS2000==7

bc_random_sample (Generates sampling file for 1 site) bc_random_sample (Generates sampling file for 1 site) bc_qa_txform.R bc_terms_results.RData - bcterm$term204[ ] dataset.R ‘KUMC’ survey.sample[ ] tumor.site[ ] bc.exclusions(conn.site) check.cases tumor.site IN survey.sample randomized.pts.selected[ ]