CZ.1.07/2.3.00/30.0037 Employment of Best Young Scientists for International Cooperation Empowerment 2 nd Postdoc Presentation Day 14. 3. 2014 Name of.

Slides:



Advertisements
Similar presentations
Recombinant DNA Technology
Advertisements

Integration of chemical-genetic and genetic interaction data links bioactive compounds to cellular target pathways Parsons et al Nature Biotechnology.
Identification of the translational regulated LBP pathway in Gonyaulax Polyedra Liwei Fan MCB 186.
Gene Regulation in Eukaryotes Same basic idea, but more intricate than in prokaryotes Why? 1.Genes have to respond to both environmental and physiological.
Biomolecular Nuclear Magnetic Resonance Spectroscopy BIOCHEMISTRY BEYOND STRUCTURE Protein dynamics from NMR Analytical Biochemistry Comparative Analysis.
Biomolecular Nuclear Magnetic Resonance Spectroscopy BIOCHEMISTRY BEYOND STRUCTURE Protein dynamics from NMR Analytical biochemistry Comparative analysis.
Enzyme Assays on Chips. Introduction Enzyme assays are used for discovery and characterization of enzymes Identification of protein function instead of.
Introduction to Molecular Biology zMolecular biology is interdisciplinary (biochemistry, genetics, cell biology) zImpact of genome projects (human, bacteria,
BIO 404/504 – Molecular Genetics Dr. Berezney Lecture 2: Regulation of Eukaryotic DNA Replication.
Enzymes Biochemistry.
MCB 317 Genetics and Genomics MCB 317 Topic 10, part 5 A Story of Transcription.
Protein Arrays By: Nicole Therrien. Overview What Are Protein Arrays? General Scheme Types of Arrays ◦ Analytical  In-depth  Example ◦ Functional 
Protein arrays LEAPS technology An array of 110 different antibodies incubated with various levels of the fluorescently labelled cognate antigens in a.
Chapter 3 History and Techniques of Cell Signaling.
GSKIP, shares a homology of Axin GID domain and functions as a negative regulator of GSK3beta Tai-Shan Cheng 1, He-Yen Chou 1, Shen-Long Howng 2, Yun-Ling.
1 © Patrick An Introduction to Medicinal Chemistry 3/e Chapter 9 DRUG DISCOVERY: FINDING A LEAD Part 4: (Lead compounds - Impact of the human genome project)
Downregulation of Wnt/ β -catenin signaling causes degeneration of hippocampal neurons in vivo April 1, 2011.
Protein Domains That Interact with Receptor Tyrosine Kinases: Structural Aspects Ming-Ming Zhou, Ph.D. MSSM Department of Pharmacology Course on “Cell.
Information in Biology. Outline What is synthetic biology? Biological Clocks The “Repressilator” Signal transduction The “Diverter”
Proteins. Protein Function  Catalysis  Structure  Movement  Defense  Regulation  Transport  Antibodies.
1 Molecular Mechanisms for gp160-Enhanced Apoptosis Keith J. Micoli, Olga A. Mamaeva, George Pan, Eric Hunter and Jay M. McDonald University of Alabama.
Reverse Interactomics
Smad3-dependent nuclear translocation of B-catenin is required for TGF-B1-induced proliferation of bone marrow- derivced adult human mesenchymal stem cells.
TATIONpRÆSEN AARHUS UNIVERSITY Department of Molecular Biology and Genetics Denmark Danish-Chinese Centre for Proteases and Cancer The Danish National.
RanBP3 enhances nuclear export of active β-catenin independently of CRM1 Hendriksen et al., JCB(2005)
Protein Microarrays and MALDI-ToF Oral presentation #3:
CZ.1.07/2.3.00/ Employment of Newly Graduated Doctors of Science for Scientific Excellence 2 nd Postdoc Presentation Day Name of the.
CZ.1.07/2.3.00/ Employment of Best Young Scientists for International Cooperation Empowerment 2 nd Postdoc Presentation Day Name of.
Molecular Cell Biology Logic and Approaches to Research Cooper.
How NMR is Used for the Study of Biomacromolecules Analytical biochemistry Comparative analysis Interactions between biomolecules Structure determination.
Microarray: An Introduction
What is phage display? An in vitro selection technique using a peptide or protein genetically fused to the coat protein of a bacteriophage.
RAS Initiative at the Federally Funded Research and Development Center at Frederick Presented By: Sara S. Hook October 1, 2015.
SEMINAR 1. Title : Discovery of Protein-Protein Interaction Modulators Using Affinity-Based High-Throughput Screening 2. Speaker : Hyun-Suk Lim (포항공대 (POSTECH))
Nuclear magnetic resonance NMR spectroscopy is a key analytical technique for structure elucidation of a wide range of materials from small molecules to.
Cotranscriptional Recruitment of the mRNA Export Factor Yra1 by Direct Interaction with the 3′ End Processing Factor Pcf11  Sara Ann Johnson, Gabrielle.
Proteon Scientists from Creative Biolabs are willing to provide custom antibody affinity measurement using ProteOn system. The system is a surface plasmon.
Molecular Docking Profacgen. The interactions between proteins and other molecules play important roles in various biological processes, including gene.
Large Hepatitis Delta Antigen Modulates Transforming Growth Factor-β Signaling Cascades: Implication of Hepatitis Delta Virus–Induced Liver Fibrosis 
Regulation of Wnt Signaling by Sox Proteins
by Wu-Guo Deng, Ying Zhu, and Kenneth K. Wu
A Cytoplasmic Inhibitor of the JNK Signal Transduction Pathway
Identification of the host interaction partners of HEV proteins in the human liver and fetal brain cDNA libraries. Identification of the host interaction.
The structure of the GPIb–filamin A complex
Npl3 functions as an independent export adaptor for the pre‐60S ribosomal subunit. Npl3 functions as an independent export adaptor for the pre‐60S ribosomal.
Amino Acids An amino acid is any compound that contains an amino group (—NH2) and a carboxyl group (—COOH) in the same molecule.
The MSP domain of MOSPD2 is sufficient to interact with STARD3 and STARD3NL The MSP domain of MOSPD2 is sufficient to interact with STARD3 and STARD3NL.
ASK1 Is Essential for JNK/SAPK Activation by TRAF2
Yingqun Huang, Renata Gattoni, James Stévenin, Joan A. Steitz 
APCFZR1 promotes BRAF ubiquitination in a D-box–dependent manner.
Approaches to signal transduction:
SUMO Promotes HDAC-Mediated Transcriptional Repression
Figure 3. MAb 19H9 displays broad cross-reactivity with IAV strains of different subtypes. (A), Amino acid sequence ... Figure 3. MAb 19H9 displays broad.
Glucose-Induced β-Catenin Acetylation Enhances Wnt Signaling in Cancer
MED12 interacts with TDRD3 in a CARM1-dependent fashion.
Transcription Factor MIZ-1 Is Regulated via Microtubule Association
Control of β-Catenin Stability
Comparison of mapped epitopes and peptides identified in immuno-SILAC screening of polyclonal antibodies against trypsin-digested PrESTs. Comparison of.
Volume 47, Issue 1, Pages (July 2012)
HPL-1 physical interacts with HIS-24 when monomethylated at lysine 14.
Cotranscriptional Recruitment of the mRNA Export Factor Yra1 by Direct Interaction with the 3′ End Processing Factor Pcf11  Sara Ann Johnson, Gabrielle.
Volume 37, Issue 2, Pages (January 2010)
The Dual Mechanism of Separase Regulation by Securin
Mst1 Is an Interacting Protein that Mediates PHLPPs' Induced Apoptosis
Eaf3 Chromodomain Interaction with Methylated H3-K36 Links Histone Deacetylation to Pol II Elongation  Amita A. Joshi, Kevin Struhl  Molecular Cell  Volume.
Paper Introduction By, Amrutha A.S..
Hua Gao, Yue Sun, Yalan Wu, Bing Luan, Yaya Wang, Bin Qu, Gang Pei 
Volume 13, Issue 3, Pages (February 2004)
Peptide Switch Is Essential for Sirt1 Deacetylase Activity
Volume 41, Issue 3, Pages (February 2011)
Presentation transcript:

CZ.1.07/2.3.00/ Employment of Best Young Scientists for International Cooperation Empowerment 2 nd Postdoc Presentation Day Name of the postdoc: Jan Ryneš

Molecular interactions of the scaffold protein Axin Mentor: Dr. Lukáš Trantírek CEITEC, Centre for Structural Biology Research group Biomolecular NMR Spectroscopy Start date of postdoc (in the project):

Axin is a scaffold protein involved in multiple signaling pathways 3 Binding regions for Axin partners RGS DIX unstructured hAxin1

Goal of the project: manipulate activity of the Wnt, JNK, p53, and TGF pathways via specific inhibition of interactions between Axin and its partners 4

5 Identification of binding sites for Axin partners using peptide microarray screen Printed Axin peptide library Recombinant protein (CK1e) Detection antibody overlapping peptides, covering the protein print in spots on a glass slide RGSDIX hAxin1 Binding sites for CK1e:

Deletion mutants of Axin used in CoIP assays 6 DIX RGSDIX RGS DIX RGSDIX RGS wt Δ1 Δ2 Δ3 Δ1+2 Δ1+3 Δ2+3 Δ1+2+3

Single binding epitope is sufficient for the interaction of Axin with CK1e; deletion of all sites abolish the interaction 7 IP: α-Myc WB: α-CK1e Input: α-CK1e Input: α-Myc wt Δ1 Δ2 Δ3 Δ1+2Δ1+3 Δ2+3 Δ1+2+3 Ctrl Myc-hAxin1

Synthetic peptides mimicking Axin binding-site can be used to inhibit the interaction in vitro 8 RGSDIXHisGST CK1e Axin based peptide inhibitor pulldown: GST WB: α-CK1e Input: α-His peptide - + RGSDIXHisGST CK1e X

Future directions 9 -use chemically stabilized synthetic peptides for testing the inhibition in cells -functional studies (effect of Axin binding on catalytic activity of CK1e, effect of blocking single interactions on the activity of different pathways using luciferase reporter system) -apply the approach for other Axin – binding partners, e.g. p53, c-Myc, Pin1, MEKK1…

Expected publication of the results: papers in peeer reviewed journals (e.g. JBC, Biochemistry, EMBO J) - review on Axin interactions - presentation on a cell signaling conference (2014 / 2015) 10